Draft Genome Sequence of Streptomyces sp. Strain AM-2504, Identified by 16S rRNA Comparative Analysis as a Streptomyces kasugaensis Strain

被引：2
作者：
Napolioni, Valerio [1 ]
Cimarelli, Lucia [2 ]
Miano, Antonino [2 ]
La Teana, Anna [3 ]
Capuni, Retina [4 ]
Giuliodori, Anna Maria [2 ]
Fabbretti, Attilio [2 ]
Spurio, Roberto [2 ]
机构：
[1] Stanford Univ, Dept Neurol & Neurol Sci, Sch Med, Stanford, CA 94305 USA
[2] Univ Camerino, Sch Biosci & Vet Med, Lab Genet, Camerino, Italy
[3] Polytech Univ Marche, Dept Life & Environm Sci, Ancona, Italy
[4] CIC BioGUNE, Struct Biol Unit, Derio, Bizkaia, Spain
来源：
MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2019年 / 8卷 / 38期
关键词：
D O I：
10.1128/MRA.00966-19
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
We report here the draft genome sequence of Streptomyces sp. strain AM-2504, a microorganism producing a broad range of biotechnologically relevant molecules. The comparative analysis of its 16S rRNA sequence allowed the assignment of this strain to the Streptomyces kasugaensis species, thus fostering functional characterization of the secondary metabolites produced by this microorganism.
引用
收藏
页数：2
相关论文
共 14 条
  • [1] [Anonymous], 2007, STREPTOMYCES NATURE
  • [2] antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification
    Blin, Kai
    Wolf, Thomas
    Chevrette, Marc G.
    Lu, Xiaowen
    Schwalen, Christopher J.
    Kautsar, Satria A.
    Duran, Hernando G. Suarez
    Santos, Emmanuel L. C. de los
    Kim, Hyun Uk
    Nave, Mariana
    Dickschat, Jeroen S.
    Mitchell, Douglas A.
    Shelest, Ekaterina
    Breitling, Rainer
    Takano, Eriko
    Lee, Sang Yup
    Weber, Tilmann
    Medema, Marnix H.
    [J]. NUCLEIC ACIDS RESEARCH, 2017, 45 (W1) : W36 - W41
  • [3] Trimmomatic: a flexible trimmer for Illumina sequence data
    Bolger, Anthony M.
    Lohse, Marc
    Usadel, Bjoern
    [J]. BIOINFORMATICS, 2014, 30 (15) : 2114 - 2120
  • [4] Structural and functional characterization of the bacterial translocation inhibitor GE82832
    Brandi, Letizia
    Maffioli, Sonia
    Donadio, Stefano
    Quaglia, Fabio
    Sette, Marco
    Milon, Pohl
    Gualerzi, Claudio O.
    Fabbretti, Attilio
    [J]. FEBS LETTERS, 2012, 586 (19) : 3373 - 3378
  • [5] The Antibiotics Dityromycin and GE82832 Bind Protein S12 and Block EF-G-Catalyzed Translocation
    Bulkley, David
    Brandi, Letizia
    Polikanov, Yury S.
    Fabbretti, Attilio
    O'Connor, Michael
    Gualerzi, Claudio O.
    Steitz, Thomas A.
    [J]. CELL REPORTS, 2014, 6 (02): : 357 - 365
  • [6] Champness W, 2000, PROKARYOTIC DEVELOPMENT, P11
  • [7] QUAST: quality assessment tool for genome assemblies
    Gurevich, Alexey
    Saveliev, Vladislav
    Vyahhi, Nikolay
    Tesler, Glenn
    [J]. BIOINFORMATICS, 2013, 29 (08) : 1072 - 1075
  • [8] New tetrahydroquinoline and indoline compounds containing a hydroxy cyclopentenone, virantmycin B and C, produced by Streptomyces sp. AM-2504
    Kimura, Toru
    Suga, Takuya
    Kameoka, Masanori
    Ueno, Minoru
    Inahashi, Yuki
    Matsuo, Hirotaka
    Iwatsuki, Masato
    Shigemura, Katsumi
    Shiomi, Kazuro
    Takahashi, Yoko
    Omura, Satoshi
    Nakashima, Takuji
    [J]. JOURNAL OF ANTIBIOTICS, 2019, 72 (03) : 169 - 173
  • [9] OMURA S, 1977, AGR BIOL CHEM TOKYO, V41, P1827
  • [10] NCBI prokaryotic genome annotation pipeline
    Tatusova, Tatiana
    DiCuccio, Michael
    Badretdin, Azat
    Chetvernin, Vyacheslav
    Nawrocki, Eric P.
    Zaslavsky, Leonid
    Lomsadze, Alexandre
    Pruitt, Kimd.
    Borodovsky, Mark
    Ostell, James
    [J]. NUCLEIC ACIDS RESEARCH, 2016, 44 (14) : 6614 - 6624
12