Recent studies of docking and molecular dynamics simulation for liquid-phase enantioseparations

被引:43
作者
Peluso, Paola [1 ]
Dessi, Alessandro [1 ]
Dallocchio, Roberto [1 ]
Mamane, Victor [2 ]
Cossu, Sergio [3 ]
机构
[1] Ist Chim Biomol ICB CNR Sede Secondaria Sassari, Sassari, Sardegna, Italy
[2] Inst Chim Strasbourg, Strasbourg, Alsace, France
[3] Univ Ca Foscari Venezia, DSMN, Mestre Venezia, Veneto, Italy
关键词
Chiral stationary phase; Docking; Liquid-phase enantioseparation; Molecular dynamics; Molecular recognition; CHIRAL STATIONARY PHASES; STEREOSELECTIVE RECOGNITION MECHANISMS; SUPERCRITICAL-FLUID CHROMATOGRAPHY; CAPILLARY-ELECTROPHORESIS; FORCE-FIELD; AMYLOSE TRIS(3,5-DIMETHYLPHENYLCARBAMATE); POLYHALOGENATED 4,4'-BIPYRIDINES; DISCRIMINATION MECHANISM; ENANTIOMERIC SEPARATION; BETA-CYCLODEXTRIN;
D O I
10.1002/elps.201800493
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Liquid-phase enantioseparations have been fruitfully applied in several fields of science. Various applications along with technical and theoretical advancements contributed to increase significantly the knowledge in this area. Nowadays, chromatographic techniques, in particular HPLC on chiral stationary phase, are considered as mature technologies. In the last thirty years, CE has been also recognized as one of the most versatile technique for analytical scale separation of enantiomers. Despite the huge number of papers published in these fields, understanding mechanistic details of the stereoselective interaction between selector and selectand is still an open issue, in particular for high-molecular weight chiral selectors like polysaccharide derivatives. With the ever growing improvement of computer facilities, hardware and software, computational techniques have become a basic tool in enantioseparation science. In this field, molecular docking and dynamics simulations proved to be extremely adaptable to model and visualize at molecular level the spatial proximity of interacting molecules in order to predict retention, selectivity, enantiomer elution order, and profile noncovalent interaction patterns underlying the recognition process. On this basis, topics and trends in using docking and molecular dynamics as theoretical complement of experimental LC and CE chiral separations are described herein. The basic concepts of these computational strategies and seminal studies performed over time are presented, with a specific focus on literature published between 2015 and November 2018. A systematic compilation of all published literature has not been attempted.
引用
收藏
页码:1881 / 1896
页数:16
相关论文
共 138 条
[1]   Molecular dynamics: Survey of methods for simulating the activity of proteins [J].
Adcock, Stewart A. ;
McCammon, J. Andrew .
CHEMICAL REVIEWS, 2006, 106 (05) :1589-1615
[2]   Quasi flexible automatic docking processing for studying stereoselective recognition mechanisms, part 2:: Prediction of ΔΔG of complexation and 1H-NMR NOE correlation [J].
Alcaro, S. ;
Gasparrini, F. ;
Incani, O. ;
Caglioti, L. ;
Pierini, M. ;
Villani, C. .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2007, 28 (06) :1119-1128
[3]  
Alcaro S, 2000, J COMPUT CHEM, V21, P515, DOI 10.1002/(SICI)1096-987X(200005)21:7<515::AID-JCC2>3.0.CO
[4]  
2-5
[5]   Current trends in molecular modeling methods applied to the study of cyclodextrin complexes [J].
Alfredo Quevedo, Mario ;
Zoppi, Ariana .
JOURNAL OF INCLUSION PHENOMENA AND MACROCYCLIC CHEMISTRY, 2018, 90 (1-2) :1-14
[6]   Chiral separation and modeling of quinolones on teicoplanin macrocyclic glycopeptide antibiotics CSP [J].
Ali, Imran ;
Suhail, Mohd ;
Asnin, Leonid .
CHIRALITY, 2018, 30 (12) :1304-1311
[7]   Enantiomeric resolution and simulation studies of four enantiomers of 5-bromo-3-ethyl-3-(4-nitrophenyl)-piperidine-2,6-dione on a Chiralpak IA column [J].
Ali, Imran ;
Lone, Mohammad Nadeem ;
Suhail, Mohd ;
AL-Othman, Zeid A. ;
Alwarthan, Abdulrahman .
RSC ADVANCES, 2016, 6 (17) :14372-14380
[8]   Validated chiral high performance liquid chromatography separation method and simulation studies of dipeptides on amylose chiral column [J].
Ali, Imran ;
Sahoo, Dibya Ranjan ;
ALOthman, Zeid A. ;
Alwarthan, Abdulrahman A. ;
Asnin, Leonid ;
Larsson, Bernt .
JOURNAL OF CHROMATOGRAPHY A, 2015, 1406 :201-209
[9]   Stereoselective interactions of chiral dipeptides on amylose based chiral stationary phases [J].
Ali, Imran ;
Haque, Ashanul ;
Al-Othman, Zeid A. ;
Al-Warthan, Abdulrahman ;
Asnin, Leonid .
SCIENCE CHINA-CHEMISTRY, 2015, 58 (03) :519-525
[10]   Combining docking and molecular dynamic simulations in drug design [J].
Alonso, Hernan ;
Bliznyuk, Andrey A. ;
Gready, Jill E. .
MEDICINAL RESEARCH REVIEWS, 2006, 26 (05) :531-568