Intrinsic enzymatic properties modulate the self-propulsion of micromotors

被引:142
作者
Arque, Xavier [1 ]
Romero-Rivera, Adrian [2 ,3 ]
Feixas, Ferran [2 ,3 ]
Patino, Tania [1 ]
Osuna, Silvia [2 ,3 ,4 ]
Sanchez, Samuel [1 ,4 ]
机构
[1] Barcelona Inst Sci & Technol, Inst Bioengn Catalonia IBEC, Baldiri I Reixac 10-12, Barcelona 08028, Spain
[2] Univ Girona, Inst Quim Computac & Catalisi, CompBioLab Grp, Carrer Maria Aurelia Capmany 69, Girona 17003, Spain
[3] Univ Girona, Dept Quim, Carrer Maria Aurelia Capmany 69, Girona 17003, Spain
[4] ICREA, Pg Lluis Co 23, Barcelona 08010, Spain
基金
欧洲研究理事会;
关键词
PARTICLE MESH EWALD; MOLECULAR-DYNAMICS; ATOMIC CHARGES; UREASE; PARAMETERS; INHIBITORS; MOTOR;
D O I
10.1038/s41467-019-10726-8
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Bio-catalytic micro- and nanomotors self-propel by the enzymatic conversion of substrates into products. Despite the advances in the field, the fundamental aspects underlying enzyme-powered self-propulsion have rarely been studied. In this work, we select four enzymes (urease, acetylcholinesterase, glucose oxidase, and aldolase) to be attached on silica microcapsules and study how their turnover number and conformational dynamics affect the self-propulsion, combining both an experimental and molecular dynamics simulations approach. Urease and acetylcholinesterase, the enzymes with higher catalytic rates, are the only enzymes capable of producing active motion. Molecular dynamics simulations reveal that urease and acetylcholinesterase display the highest degree of flexibility near the active site, which could play a role on the catalytic process. We experimentally assess this hypothesis for urease micromotors through competitive inhibition (acetohydroxamic acid) and increasing enzyme rigidity (beta-mercaptoethanol). We conclude that the conformational changes are a precondition of urease catalysis, which is essential to generate self-propulsion.
引用
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页数:12
相关论文
共 66 条
[1]   Dynamic Loading and Unloading of Proteins in Polymeric Stomatocytes: Formation of an Enzyme-Loaded Supramolecular Nanomotor [J].
Abdelmohsen, Loai K. E. A. ;
Nijemeisland, Marlies ;
Pawar, Gajanan M. ;
Janssen, Geert-Jan A. ;
Nolte, Roeland J. M. ;
van Hest, Jan C. M. ;
Wilson, Daniela A. .
ACS NANO, 2016, 10 (02) :2652-2660
[2]  
[Anonymous], 2016, [No title captured]
[3]   Theoretical study of electron transfer between the photolyase catalytic cofactor FADH- and DNA thymine dimer [J].
Antony, J ;
Medvedev, DM ;
Stuchebrukhov, AA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (06) :1057-1065
[4]   Crystal Structure of the First Plant Urease from Jack Bean: 83 Years of Journey from Its First Crystal to Molecular Structure [J].
Balasubramanian, Anuradha ;
Ponnuraj, Karthe .
JOURNAL OF MOLECULAR BIOLOGY, 2010, 400 (03) :274-283
[5]   A WELL-BEHAVED ELECTROSTATIC POTENTIAL BASED METHOD USING CHARGE RESTRAINTS FOR DERIVING ATOMIC CHARGES - THE RESP MODEL [J].
BAYLY, CI ;
CIEPLAK, P ;
CORNELL, WD ;
KOLLMAN, PA .
JOURNAL OF PHYSICAL CHEMISTRY, 1993, 97 (40) :10269-10280
[6]   The complex of Bacillus pasteurii urease with acetohydroxamate anion from X-ray data at 1.55 Å resolution [J].
Benini, S ;
Rypniewski, WR ;
Wilson, KS ;
Miletti, S ;
Ciurli, S ;
Mangani, S .
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2000, 5 (01) :110-118
[7]   A perspective on enzyme catalysis [J].
Benkovic, SJ ;
Hammes-Schiffer, S .
SCIENCE, 2003, 301 (5637) :1196-1202
[8]   STRUCTURAL-PROPERTIES OF ACETYLCHOLINESTERASE FROM EEL ELECTRIC TISSUE AND BOVINE ERYTHROCYTE-MEMBRANES [J].
BERMAN, JD .
BIOCHEMISTRY, 1973, 12 (09) :1710-1715
[9]   ATOMIC CHARGES DERIVED FROM SEMIEMPIRICAL METHODS [J].
BESLER, BH ;
MERZ, KM ;
KOLLMAN, PA .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1990, 11 (04) :431-439
[10]  
Case D.A., 2016, AMBER