Frequency of the Mycobacterium tuberculosis RDRio genotype and its association with multidrug-resistant tuberculosis

被引:11
作者
de Almeida, Isabela Neves [1 ]
Goncalves Vasconcellos, Sidra Ezidio [2 ]
de Assis Figueredo, Lida Jouca [1 ]
Teixeira Dantas, Nayanne Gama [1 ]
Augusto, Claudio Jose [3 ]
Amaral Hadaad, Joao Paulo [4 ]
Suffys, Philip Noel [2 ]
Carvalho, Wania da Silva [5 ]
de Miranda, Silvana Spindola [1 ]
机构
[1] Univ Fed Minas Gerais UFMG, Fac Med, Lab Pesquisa Micobacterias, Belo Horizonte, MG, Brazil
[2] Fundacao Oswaldo Cruz FIOCRUZ, Inst Oswaldo Cruz, Lab Biol Mol Aplicada Micobacterias, Rio De Janeiro, RJ, Brazil
[3] Fundacao Ezequiel Dias FUNED, Belo Horizonte, MG, Brazil
[4] Escola Vet UFMG, Belo Horizonte, MG, Brazil
[5] Fac Farm UFMG, Belo Horizonte, MG, Brazil
关键词
Tuberculosis; Mycobacterium tuberculosis; Multidrug-resistant tuberculosis; Genotype; Single nucleotide polymorphisms; MINAS-GERAIS; COMPLEX; SUBLINEAGE; STATE;
D O I
10.1186/s12879-019-4152-7
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
BackgroundIn recent decades, Mycobacterium tuberculosis with the RDRio genotype, frequently isolated from tuberculosis patients in Rio de Janeiro, has become part of the Latin American - Mediterranean (LAM) family and has been associated with multidrug-resistant tuberculosis (MDR-TB). The aim of this study was to investigate the frequency of M. tuberculosis RDRio in the state of Minas Gerais, Brazil, and its relationship with MDR-TB.MethodsFor convenience, 172 susceptible and 63 MDR M. tuberculosis isolates were taken from pulmonary samples from patients diagnosed between January 2007 and December 2011. The DNA extracted from these isolates was analyzed by spoligotyping, PCR-RFLP to characterize fbpC(103)/Ag85C103, multiplex PCR to detect RDRio and RD174, and MIRU-VNTR 24 loci.ResultsAmong the 235 isolates, the RDRio pattern was identified in 122 (51.9%) isolates (IC 0.45-0.58), with 100 (42.5%) wild-type and 13 (5.5%) mixed pattern isolates, whereas RD174 was identified in 93 of the 122 RDRio positive samples (76.3%). The LAM family and the LAM9 lineage were the most frequently identified among the isolates in this study. Among the 63 MDR isolates, 41 (65.1%) were RDRio and 28 (44.4%) RD174.ConclusionThe association of both deletions with MDR proved to be statistically significant, corroborating the few reports that have associated RDRio with MDR.
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共 20 条
[11]   RDRio Mycobacterium tuberculosis infection is associated with a higher frequency of cavitary pulmonary disease [J].
Oliveira Lazzarini, Luiz Claudio ;
Spindola, Silvana Miranda ;
Bang, Heejung ;
Gibson, Andrea L. ;
Weisenberg, Scott ;
Carvalho, Wania da Silva ;
Augusto, Claudio Jose ;
Huard, Richard C. ;
Kritski, Afranio L. ;
Ho, John L. .
JOURNAL OF CLINICAL MICROBIOLOGY, 2008, 46 (07) :2175-2183
[12]   Discovery of a novel Mycobacterium tuberculosis lineage that is a major cause of tuberculosis in Rio de Janeiro, Brazil [J].
Oliveira Lazzarini, Luiz Claudio ;
Huard, Richard C. ;
Boechat, Neio L. ;
Gomes, Harrison M. ;
Oelemann, Maranibia C. ;
Kurepina, Natalia ;
Shashkina, Elena ;
Mello, Fernanda C. Q. ;
Gibson, Andrea L. ;
Virginio, Milena J. ;
Marsico, Ana Grazia ;
Butler, W. Ray ;
Kreiswirth, Barry N. ;
Suffys, Philip N. ;
Lapa e Silva, Jose Roberto ;
Ho, John L. .
JOURNAL OF CLINICAL MICROBIOLOGY, 2007, 45 (12) :3891-3902
[13]   Genetic Structuration, Demography and Evolutionary History of Mycobacterium tuberculosis LAM9 Sublineage in the Americas as Two Distinct Subpopulations Revealed by Bayesian Analyses [J].
Reynaud, Yann ;
Millet, Julie ;
Rastogi, Nalin .
PLOS ONE, 2015, 10 (10)
[14]  
Siddiqi S.H., 2006, BACTEC MGIT 960 TB System Product and Procedure Manual
[15]   Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis [J].
Supply, Philip ;
Allix, Caroline ;
Lesjean, Sarah ;
Cardoso-Oelemann, Mara ;
Ruesch-Gerdes, Sabine ;
Willery, Eve ;
Savine, Evgueni ;
de Haas, Petra ;
van Deutekom, Henk ;
Roring, Solvig ;
Bifani, Pablo ;
Kurepina, Natalia ;
Kreiswirth, Barry ;
Sola, Christophe ;
Rastogi, Nalin ;
Vatin, Vincent ;
Gutierrez, Maria Cristina ;
Fauville, Maryse ;
Niemann, Stefan ;
Skuce, Robin ;
Kremer, Kristin ;
Locht, Camille ;
van Soolingen, Dick .
JOURNAL OF CLINICAL MICROBIOLOGY, 2006, 44 (12) :4498-4510
[16]   Genetic diversity and molecular epidemiology of multidrug-resistant Mycobacterium tuberculosis in Minas Gerais State, Brazil [J].
Teixeira Dantas, Nayanne Gama ;
Suffys, Phillip Noel ;
Carvalho, Wania da Silva ;
Gomes, Harrison Magdinier ;
de Almeida, Isabela Neves ;
de Assis, Lida Jouca ;
Augusto, Claudio Jose ;
Gomgnimbou, Michel Kireopori ;
Refregier, Guislaine ;
Sola, Christophe ;
de Miranda, Silvana Spindola .
BMC INFECTIOUS DISEASES, 2015, 15
[17]   Strain Classification of Mycobacterium tuberculosis Isolates in Brazil Based on Genotypes Obtained by Spoligotyping, Mycobacterial Interspersed Repetitive Unit Typing and the Presence of Large Sequence and Single Nucleotide Polymorphism [J].
Vasconcellos, Sidra E. G. ;
Acosta, Chyntia Carolina ;
Gomes, Lia Lima ;
Conceicao, Emilyn Costa ;
Lima, Karla Valeria ;
de Araujo, Marcelo Ivens ;
Leite, Maria de Lourdes ;
Tannure, Flavio ;
de Souza Caldas, Paulo Cesar ;
Gomes, Harrison M. ;
Santos, Adalberto Rezende ;
Gomgnimbou, Michel K. ;
Sola, Christophe ;
Couvin, David ;
Rastogi, Nalin ;
Boechat, Neio ;
Suffys, Philip Noel .
PLOS ONE, 2014, 9 (10)
[18]  
Weisenberg SA, 2014, INFECT GENET EVOL, V27, P380
[19]  
who, GLOBAL TUBERCULOSIS
[20]   Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay [J].
Zhang, Jian ;
Abadia, Edgar ;
Refregier, Guislaine ;
Tafaj, Silva ;
Boschiroli, Maria Laura ;
Guillard, Bertrand ;
Andremont, Antoine ;
Ruimy, Raymond ;
Sola, Christophe .
JOURNAL OF MEDICAL MICROBIOLOGY, 2010, 59 (03) :285-294