Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8

被引:9
|
作者
Wang, HF
Takemoto, CH
Murayama, K
Sakai, H
Tatsuguchi, A
Terada, T
Shirouzu, M
Kuramitsu, S
Yokoyama, S
机构
[1] RIKEN, Genomic Sci Ctr, Prot Res Grp, Yokohama, Kanagawa 2300045, Japan
[2] Osaka Univ, Grad Sch Sci, Dept Biol, Osaka 5600043, Japan
[3] Univ Tokyo, Grad Sch Sci, Dept Biochem & Biophys, Tokyo 1130033, Japan
关键词
ribosomal protein L27; protein-RNA interactions; ribosome; Thermus thermophilus HB8; crystal structure;
D O I
10.1110/ps.04864904
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Ribosomal protein L27 is located near the peptidyltransferase center at the interface of ribosomal subunits, and is important for ribosomal assembly and function. We report the crystal structure of ribosomal protein L27 from Thermus thermophilus HB8, which was determined by the multiwavelength anomalous dispersion method and refined to an R-factor of 19.7% (R-free = 23.6%) at 2.8 Angstrom resolution. The overall fold is an all beta-sheet hybrid. It consists of two sets of four-stranded beta-sheets formed around a well-defined hydrophobic core, with a highly positive charge on the protein surface. The structure of ribosomal protein L27 from T. thermophilus HB8 in the RNA-free form is investigated, and its functional roles in the ribosomal subunit are discussed.
引用
收藏
页码:2806 / 2810
页数:5
相关论文
共 50 条
  • [41] Structure of D-alanine-D-alanine ligase from Thermus thermophilus HB8: cumulative conformational change and enzyme-ligand interactions
    Kitamura, Yoshiaki
    Ebihara, Akio
    Agari, Yoshihiro
    Shinkai, Akeo
    Hirotsu, Ken
    Kuramitsu, Seiki
    ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2009, 65 : 1098 - 1106
  • [42] Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus:: Purification, crystallization and structure determination
    Clemons, WM
    Brodersen, DE
    McCutcheon, JP
    May, JLC
    Carter, AP
    Morgan-Warren, RJ
    Wimberly, BT
    Ramakrishnan, V
    JOURNAL OF MOLECULAR BIOLOGY, 2001, 310 (04) : 827 - 843
  • [43] Structure-Function Relationship of the β-Hairpin of Thermus thermophilus HB27 Laccase
    Miranda-Zaragoza, Beatriz
    Huerta-Miranda, Guillermo A.
    Garcia-Garcia, Wendy I.
    Hernandez-alvarez, Elizabeth
    Solano-Peralta, Alejandro
    Lee, Jaeyong
    Strynadka, Natalie
    Miranda-Hernandez, Margarita
    Rodriguez-Almazan, Claudia
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2025, 26 (02)
  • [44] Crystal structure of a hypothetical protein, TTHA0829 from Thermus thermophilus HB8, composed of cystathionine-β-synthase (CBS) and aspartate-kinase chorismate-mutase tyrA (ACT) domains
    Nakabayashi, Makoto
    Shibata, Naoki
    Ishido-Nakai, Emi
    Kanagawa, Mayumi
    Iio, Yota
    Komori, Hirofumi
    Ueda, Yasufumi
    Nakagawa, Noriko
    Kuramitsu, Seiki
    Higuchi, Yoshiki
    EXTREMOPHILES, 2016, 20 (03) : 275 - 282
  • [45] Crystal structure of a hypothetical protein, TTHA0829 from Thermus thermophilus HB8, composed of cystathionine-β-synthase (CBS) and aspartate-kinase chorismate-mutase tyrA (ACT) domains
    Makoto Nakabayashi
    Naoki Shibata
    Emi Ishido-Nakai
    Mayumi Kanagawa
    Yota Iio
    Hirofumi Komori
    Yasufumi Ueda
    Noriko Nakagawa
    Seiki Kuramitsu
    Yoshiki Higuchi
    Extremophiles, 2016, 20 : 275 - 282
  • [46] Functional characterization of a thermostable methionine adenosyltransferase from Thermus thermophilus HB27
    Liu, Yanhui
    Chen, Biqiang
    Wang, Zheng
    Liu, Luo
    Tan, Tianwei
    FRONTIERS OF CHEMICAL SCIENCE AND ENGINEERING, 2016, 10 (02) : 238 - 244
  • [47] The solution structure of ribosomal protein L36 from Thermus thermophilus reveals a zinc-ribbon-like fold
    Härd, T
    Rak, A
    Allard, P
    Kloo, L
    Garber, M
    JOURNAL OF MOLECULAR BIOLOGY, 2000, 296 (01) : 169 - 180
  • [48] The solution structure of ribosomal protein L18 from Thermus thermophilus reveals a conserved RNA-binding fold
    Woestenenk, EA
    Gongadze, GM
    Shcherbakov, DV
    Rak, AV
    Garber, MB
    Härd, T
    Berglund, H
    BIOCHEMICAL JOURNAL, 2002, 363 (03) : 553 - 561
  • [49] The crystal structure of the ttCsaA protein:: an export-related chaperone from Thermus thermophilus
    Kawaguchi, S
    Müller, J
    Linde, D
    Kuramitsu, S
    Shibata, T
    Inoue, Y
    Vassylyev, DG
    Yokoyama, S
    EMBO JOURNAL, 2001, 20 (03): : 562 - 569
  • [50] Characterization of DNA polymerase X from Thermus thermophilus HB8 reveals the POLXc and PHP domains are both required for 35 exonuclease activity
    Nakane, Shuhei
    Nakagawa, Noriko
    Kuramitsu, Seiki
    Masui, Ryoji
    NUCLEIC ACIDS RESEARCH, 2009, 37 (06) : 2037 - 2052