More than the sum of its parts: Coarse-grained peptide-lipid interactions from a simple cross-parametrization

被引:38
作者
Bereau, Tristan [1 ]
Wang, Zun-Jing [1 ]
Deserno, Markus [1 ]
机构
[1] Carnegie Mellon Univ, Dept Phys, Pittsburgh, PA 15213 USA
基金
美国国家卫生研究院;
关键词
MOLECULAR-DYNAMICS; FORCE-FIELD; PROTEIN INTERACTIONS; MEMBRANE-PROTEINS; SIDE-CHAIN; MODEL; SIMULATION; BILAYER; HELIX; TILT;
D O I
10.1063/1.4867465
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Interfacial systems are at the core of fascinating phenomena in many disciplines, such as biochemistry, soft-matter physics, and food science. However, the parametrization of accurate, reliable, and consistent coarse-grained (CG) models for systems at interfaces remains a challenging endeavor. In the present work, we explore to what extent two independently developed solvent-free CG models of peptides and lipids-of different mapping schemes, parametrization methods, target functions, and validation criteria-can be combined by only tuning the cross-interactions. Our results show that the cross-parametrization can reproduce a number of structural properties of membrane peptides (for example, tilt and hydrophobic mismatch), in agreement with existing peptide-lipid CG force fields. We find encouraging results for two challenging biophysical problems: (i) membrane pore formation mediated by the cooperative action of several antimicrobial peptides, and (ii) the insertion and folding of the helix-forming peptide WALP23 in the membrane. (C) 2014 AIP Publishing LLC.
引用
收藏
页数:11
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