In this paper, a practical technical approach for the evaluation of hydraulic conductivity in complex fractured rock mass is present in a seabed gold mine. According to hydrogeological conditions and characteristics survey in the field, geometry measuring method was applied in the in-situ investigation. Moreover, various methods were involved in the evaluation of the fracture development, water seepage features and permeability of the fractured rock mass. Through this study, a particular set of hydrogeological investigation, research and permeability evaluation methods were put forward, which are of great significance to the research and practical production of mines with similar cases.