Spike mutation D614G alters SARS-CoV-2 fitness

被引:1040
作者
Plante, Jessica A. [1 ,2 ,3 ]
Liu, Yang [4 ]
Liu, Jianying [2 ,3 ]
Xia, Hongjie [4 ]
Johnson, Bryan A. [2 ]
Lokugamage, Kumari G. [3 ]
Zhang, Xianwen [4 ]
Muruato, Antonio E. [2 ,3 ]
Zou, Jing [4 ]
Fontes-Garfias, Camila R. [4 ]
Mirchandani, Divya [1 ,2 ,3 ]
Scharton, Dionna [1 ,2 ,3 ]
Bilello, John P. [5 ]
Ku, Zhiqiang [6 ]
An, Zhiqiang [6 ]
Kalveram, Birte [7 ]
Freiberg, Alexander N. [2 ,7 ,8 ,9 ]
Menachery, Vineet D. [2 ,3 ]
Xie, Xuping [4 ]
Plante, Kenneth S. [1 ,2 ,3 ]
Weaver, Scott C. [1 ,2 ,3 ,8 ,9 ,10 ,11 ]
Shi, Pei-Yong [2 ,4 ,8 ,9 ,10 ,11 ]
机构
[1] Univ Texas Med Branch, World Reference Ctr Emerging Viruses & Arboviruse, Galveston, TX 77555 USA
[2] Univ Texas Med Branch, Inst Human Infect & Immun, Galveston, TX 77555 USA
[3] Univ Texas Med Branch, Dept Microbiol & Immunol, Galveston, TX 77555 USA
[4] Univ Texas Med Branch, Dept Biochem & Mol Biol, Galveston, TX 77555 USA
[5] Gilead Sci, Foster City, CA USA
[6] Univ Texas Hlth Sci Ctr Houston, Texas Therapeut Inst, Brown Fdn Inst Mol Med, Houston, TX 77030 USA
[7] Univ Texas Med Branch, Dept Pathol, Galveston, TX 77555 USA
[8] Univ Texas Med Branch, Ctr Biodef & Emerging Infect Dis, Galveston, TX 77555 USA
[9] Univ Texas Med Branch, Sealy Inst Vaccine Sci, Galveston, TX 77555 USA
[10] Univ Texas Med Branch, Inst Translat Sci, Galveston, TX 77555 USA
[11] Univ Texas Med Branch, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA
关键词
INFECTION; PROTEIN;
D O I
10.1038/s41586-020-2895-3
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike protein substitution D614G became dominant during the coronavirus disease 2019 (COVID-19) pandemic(1,2). However, the effect of this variant on viral spread and vaccine efficacy remains to be defined. Here we engineered the spike D614G substitution in the USA-WA1/2020 SARS-CoV-2 strain, and found that it enhances viral replication in human lung epithelial cells and primary human airway tissues by increasing the infectivity and stability of virions. Hamsters infected with SARS-CoV-2 expressing spike(D614G) (G614 virus) produced higher infectious titres in nasal washes and the trachea, but not in the lungs, supporting clinical evidence showing that the mutation enhances viral loads in the upper respiratory tract of COVID-19 patients and may increase transmission. Sera from hamsters infected with D614 virus exhibit modestly higher neutralization titres against G614 virus than against D614 virus, suggesting that the mutation is unlikely to reduce the ability of vaccines in clinical trials to protect against COVID-19, and that therapeutic antibodies should be tested against the circulating G614 virus. Together with clinical findings, our work underscores the importance of this variant in viral spread and its implications for vaccine efficacy and antibody therapy. The SARS-CoV-2 variant expressing spike(D641G) shows increased infectivity in human lung epithelial cells and in hamster and primary human upper airway tissues, but is more susceptible to neutralization by antibodies raised against SARS-CoV-2.
引用
收藏
页码:116 / 121
页数:6
相关论文
共 35 条
  • [1] Andersen C., 2019, CATSEYES CREATE CATS
  • [2] Phenotypic Responses of Differentiated Asthmatic Human Airway Epithelial Cultures to Rhinovirus
    Bai, Jianwu
    Smock, Steven L.
    Jackson, George R., Jr.
    MacIsaac, Kenzie D.
    Huang, Yongsheng
    Mankus, Courtney
    Oldach, Jonathan
    Roberts, Brian
    Ma, Yu-Lu
    Klappenbach, Joel A.
    Crackower, Michael A.
    Alves, Stephen E.
    Hayden, Patrick J.
    [J]. PLOS ONE, 2015, 10 (02):
  • [3] "Submergence" of Western equine encephalitis virus: Evidence of positive selection argues against genetic drift and fitness reductions
    Bergren, Nicholas A.
    Haller, Sherry
    Rossi, Shannan L.
    Seymour, Robert L.
    Huang, Jing
    Miller, Aaron L.
    Bowen, Richard A.
    Hartman, Daniel A.
    Brault, Aaron C.
    Weaver, Scott C.
    [J]. PLOS PATHOGENS, 2020, 16 (02)
  • [4] Inferring relative proportions of DNA variants from sequencing electropherograms
    Carr, I. M.
    Robinson, J. I.
    Dimitriou, R.
    Markham, A. F.
    Morgan, A. W.
    Bonthron, D. T.
    [J]. BIOINFORMATICS, 2009, 25 (24) : 3244 - 3250
  • [5] Simulation of the Clinical and Pathological Manifestations of Coronavirus Disease 2019 (COVID-19) in a Golden Syrian Hamster Model: Implications for Disease Pathogenesis and Transmissibility
    Chan, Jasper Fuk-Woo
    Zhang, Anna Jinxia
    Yuan, Shuofeng
    Poon, Vincent Kwok-Man
    Chan, Chris Chung-Sing
    Lee, Andrew Chak-Yiu
    Chan, Wan-Mui
    Fan, Zhimeng
    Tsoi, Hoi-Wah
    Wen, Lei
    Liang, Ronghui
    Cao, Jianli
    Chen, Yanxia
    Tang, Kaiming
    Luo, Cuiting
    Cai, Jian-Piao
    Kok, Kin-Hang
    Chu, Hin
    Chan, Kwok-Hung
    Sridhar, Siddharth
    Chen, Zhiwei
    Chen, Honglin
    To, Kelvin Kai-Wang
    Yuen, Kwok-Yung
    [J]. CLINICAL INFECTIOUS DISEASES, 2020, 71 (09) : 2428 - 2446
  • [6] Host Alternation of Chikungunya Virus Increases Fitness while Restricting Population Diversity and Adaptability to Novel Selective Pressures
    Coffey, Lark L.
    Vignuzzi, Marco
    [J]. JOURNAL OF VIROLOGY, 2011, 85 (02) : 1025 - 1035
  • [7] The New Statistics: Why and How
    Cumming, Geoff
    [J]. PSYCHOLOGICAL SCIENCE, 2014, 25 (01) : 7 - 29
  • [8] Daniloski Zharko, 2020, bioRxiv, DOI 10.1101/2020.06.14.151357
  • [9] The four horsemen of a viral Apocalypse: The pathogenesis of SARS-CoV-2 infection (COVID-19)
    Domingo, Pere
    Mur, Isabel
    Pomar, Virginia
    Corominas, Hector
    Casademont, Jordi
    Benito, Natividad de
    [J]. EBIOMEDICINE, 2020, 58
  • [10] Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States
    Fauver, Joseph R.
    Petrone, Mary E.
    Hodcroft, Emma B.
    Shioda, Kayoko
    Ehrlich, Hanna Y.
    Watts, Alexander G.
    Vogels, Chantal B. F.
    Brito, Anderson F.
    Alpert, Tara
    Muyombwe, Anthony
    Razeq, Jafar
    Downing, Randy
    Cheemarla, Nagarjuna R.
    Wyllie, Anne L.
    Kalinich, Chaney C.
    Ott, Isabel M.
    Quick, Joshua
    Loman, Nicholas J.
    Neugebauer, Karla M.
    Greninger, Alexander L.
    Jerome, Keith R.
    Roychoudhury, Pavitra
    Xie, Hong
    Shrestha, Lasata
    Huang, Meei-Li
    Pitzer, Virginia E.
    Iwasaki, Akiko
    Omer, Saad B.
    Khan, Kamran
    Bogoch, Isaac I.
    Martinello, Richard A.
    Foxman, Ellen F.
    Landry, Marie L.
    Neher, Richard A.
    Ko, Albert, I
    Grubaugh, Nathan D.
    [J]. CELL, 2020, 181 (05) : 990 - +