The Host Nonsense-Mediated mRNA Decay Pathway Restricts Mammalian RNA Virus Replication

被引:136
作者
Balistreri, Giuseppe [1 ]
Horvath, Peter [2 ,3 ]
Schweingruber, Christoph [4 ,5 ]
Zuend, David [4 ]
McInerney, Gerald [6 ]
Merits, Andres [7 ]
Muehlemann, Oliver [4 ]
Azzalin, Claus [1 ]
Helenius, Ari [1 ]
机构
[1] ETH, Inst Biochem, CH-8093 Zurich, Switzerland
[2] Biol Res Ctr, Synthet & Syst Biol Unit, H-6726 Szeged, Hungary
[3] Univ Helsinki, FIMM Inst, FIN-00014 Helsinki, Finland
[4] Univ Bern, Dept Chem & Biochem, CH-3012 Bern, Switzerland
[5] Univ Bern, Grad Sch Cellular & Biomed Sci, CH-3012 Bern, Switzerland
[6] Karolinska Inst, Dept Microbiol Tumor & Cell Biol, S-17177 Stockholm, Sweden
[7] Univ Tartu, Inst Technol, EE-50090 Tartu, Estonia
基金
瑞士国家科学基金会;
关键词
SEMLIKI-FOREST-VIRUS; TEMPERATURE-SENSITIVE MUTANTS; PLASMA-MEMBRANE; HUMAN-CELLS; UPF1; PHOSPHORYLATION; COMPLEX; SURVEILLANCE; BINDING; DEGRADATION; HELICASE;
D O I
10.1016/j.chom.2014.08.007
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
In addition to classically defined immune mechanisms, cell-intrinsic processes can restrict virus infection and have shaped virus evolution. The details of this virus-host interaction are still emerging. Following a genome-wide siRNA screen for host factors affecting replication of Semliki Forest virus (SFV), a positive-strand RNA (+RNA) virus, we found that depletion of nonsense-mediated mRNA decay (NMD) pathway components Upf1, Smg5, and Smg7 led to increased levels of viral proteins and RNA and higher titers of released virus. The inhibitory effect of NMD was stronger when virus replication efficiency was impaired by mutations or deletions in the replicase proteins. Consequently, depletion of NMD components resulted in a more than 20-fold increase in production of these attenuated viruses. These findings indicate that a cellular mRNA quality control mechanism serves as an intrinsic barrier to the translation of early viral proteins and the amplification of +RNA viruses in animal cells.
引用
收藏
页码:403 / 411
页数:9
相关论文
共 39 条
[1]   The human RNA surveillance factor UPF1 is required for S phase progression and genome stability [J].
Azzalin, CM ;
Lingner, J .
CURRENT BIOLOGY, 2006, 16 (04) :433-439
[2]   Enzymatic defects of the nsP2 proteins of Semliki Forest virus temperature-sensitive mutants [J].
Balistreri, Giuseppe ;
Caldentey, Javier ;
Kaariainen, Leevi ;
Ahola, Tero .
JOURNAL OF VIROLOGY, 2007, 81 (06) :2849-2860
[3]   Image-based transcriptomics in thousands of single human cells at single-molecule resolution [J].
Battich, Nico ;
Stoeger, Thomas ;
Pelkmans, Lucas .
NATURE METHODS, 2013, 10 (11) :1127-1133
[4]   A system for stable expression of short interfering RNAs in mammalian cells [J].
Brummelkamp, TR ;
Bernards, R ;
Agami, R .
SCIENCE, 2002, 296 (5567) :550-553
[5]   EJC-independent degradation of nonsense immunoglobulin-μ mRNA depends on 3′ UTR length [J].
Bühler, M ;
Steiner, S ;
Mohn, F ;
Paillusson, A ;
Mühlemann, O .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2006, 13 (05) :462-464
[6]   CellProfiler: image analysis software for identifying and quantifying cell phenotypes [J].
Carpenter, Anne E. ;
Jones, Thouis Ray ;
Lamprecht, Michael R. ;
Clarke, Colin ;
Kang, In Han ;
Friman, Ola ;
Guertin, David A. ;
Chang, Joo Han ;
Lindquist, Robert A. ;
Moffat, Jason ;
Golland, Polina ;
Sabatini, David M. .
GENOME BIOLOGY, 2006, 7 (10)
[7]   The nonsense-mediated decay RNA surveillance pathway [J].
Chang, Yao-Fu ;
Imam, J. Saadi ;
Wilkinson, Miles E. .
ANNUAL REVIEW OF BIOCHEMISTRY, 2007, 76 :51-74
[8]   Structural and functional insights into the human Upf1 helicase core [J].
Cheng, Zhihong ;
Muhlrad, Denise ;
Lim, Meng Kiat ;
Parker, Roy ;
Song, Haiwei .
EMBO JOURNAL, 2007, 26 (01) :253-264
[9]   Organelle-Like Membrane Compartmentalization of Positive-Strand RNA Virus Replication Factories [J].
den Boon, Johan A. ;
Ahlquist, Paul .
ANNUAL REVIEW OF MICROBIOLOGY, VOL 64, 2010, 2010, 64 :241-256
[10]   Structural basis for the regulatory function of a complex zinc-binding domain in a replicative arterivirus helicase resembling a nonsense-mediated mRNA decay helicase [J].
Deng, Zengqin ;
Lehmann, Kathleen C. ;
Li, Xiaorong ;
Feng, Chong ;
Wang, Guoqiang ;
Zhang, Qi ;
Qi, Xiaoxuan ;
Yu, Lin ;
Zhang, Xingliang ;
Feng, Wenhai ;
Wu, Wei ;
Gong, Peng ;
Tao, Ye ;
Posthuma, Clara C. ;
Snijder, Eric J. ;
Gorbalenya, Alexander E. ;
Chen, Zhongzhou .
NUCLEIC ACIDS RESEARCH, 2014, 42 (05) :3464-3477