Genetic mutations in influenza H3N2 viruses from a 2012 epidemic in Southern China

被引:14
作者
Zhong, Jing [1 ,2 ]
Liang, Lijun [1 ,3 ]
Huang, Ping [1 ,3 ]
Zhu, Xiaolan [1 ]
Zou, Lirong [1 ]
Yu, Shouyi [4 ]
Zhang, Xin [1 ]
Zhang, Yonghui [1 ]
Ni, Hanzhong [1 ]
Yan, Jin [1 ]
机构
[1] Guangdong Prov Ctr Dis Control & Prevent, Key Lab Emergency Pathogen Detect, Guangzhou 511430, Guangdong, Peoples R China
[2] Guangzhou Chest Hosp, Dept Infect Dis, Guangzhou 510095, Guangdong, Peoples R China
[3] Sun Yat Sen Univ, Sch Publ Hlth, Dept Epidemiol, Guangzhou 510080, Guangdong, Peoples R China
[4] Southern Med Univ, Sch Publ Hlth & Trop Med, Dept Epidemiol, Guangzhou 510515, Guangdong, Peoples R China
基金
中国国家自然科学基金;
关键词
Influenza; H3N2; Phylogenetics; Mutation; Epidemic; A VIRUSES; HEMAGGLUTININ; EVOLUTION; GLYCOSYLATION; VARIABILITY; PROTEIN; H1N1;
D O I
10.1186/1743-422X-10-345
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Background: An influenza H3N2 epidemic occurred throughout Southern China in 2012. Methods: We analyzed the hemagglutinin (HA) and neuraminidase (NA) genes of influenza H3N2 strains isolated between 2011-2012 from Guangdong. Mutation sites, evolutionary selection, antigenic sites, and N-glycosylation within these strains were analyzed. Results: The 2011-2012 Guangdong strains contained the HA-A214S, HA-V239I, HA-N328S, NA-L81P, and NA-D93G mutations, similar to those seen in the A/Perth/16/2009 influenza strain. The HA-NSS061-063 and NNS160-162 glycosylation sites were prevalent among the 2011-2012 Guangdong strains but the NA-NRS402-404 site was deleted. Antigenically, there was a four-fold difference between A/Perth/16/2009 -like strains and the 2011-2012 Guangdong strains. Conclusion: Antigenic drift of the H3N2 subtype contributed to the occurrence of the Southern China influenza epidemic of 2012.
引用
收藏
页数:7
相关论文
共 24 条
[1]   Bioinformatics and evolutionary insight on the spike glycoprotein gene of QX-like and Massachusetts strains of infectious bronchitis virus [J].
Abro, Shahid Hussain ;
Ullman, Karin ;
Belak, Sandor ;
Baule, Claudia .
VIROLOGY JOURNAL, 2012, 9
[2]   Molecular and antigenic evolution of human influenza A/H3N2 viruses in Quebec, Canada, 2009-2011 [J].
Ann, Julie ;
Papenburg, Jesse ;
Bouhy, Xavier ;
Rheaume, Chantal ;
Hamelin, Marie-Eve ;
Boivin, Guy .
JOURNAL OF CLINICAL VIROLOGY, 2012, 53 (01) :88-92
[3]   Global Migration Dynamics Underlie Evolution and Persistence of Human Influenza A (H3N2) [J].
Bedford, Trevor ;
Cobey, Sarah ;
Beerli, Peter ;
Pascual, Mercedes .
PLOS PATHOGENS, 2010, 6 (05)
[4]   Genetic analysis of H3N2 influenza A viruses isolated in 2006-2007 in Nairobi, Kenya [J].
Bulimo, Wallace D. ;
Garner, Jason L. ;
Schnabel, David C. ;
Bedno, Sheryl A. ;
Njenga, M. Kariuki ;
Ochieng, Walter O. ;
Amukoye, Evans ;
Magana, James M. ;
Simwa, James M. ;
Ofula, Victor O. ;
Lifumo, Samwel M. ;
Wangui, Julia ;
Breiman, Robert F. ;
Martin, Samuel K. .
INFLUENZA AND OTHER RESPIRATORY VIRUSES, 2008, 2 (03) :107-113
[5]  
Center for Public Health Surveillance and Information Service (CPHSIS), 2012, DIS SURVEILL, V27, P505
[6]   Glycosylation Focuses Sequence Variation in the Influenza A Virus H1 Hemagglutinin Globular Domain [J].
Das, Suman R. ;
Puigbo, Pere ;
Hensley, Scott E. ;
Hurt, Darrell E. ;
Bennink, Jack R. ;
Yewdell, Jonathan W. .
PLOS PATHOGENS, 2010, 6 (11)
[7]   Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology [J].
Delport, Wayne ;
Poon, Art F. Y. ;
Frost, Simon D. W. ;
Pond, Sergei L. Kosakovsky .
BIOINFORMATICS, 2010, 26 (19) :2455-2457
[8]   Bayesian Phylogenetics with BEAUti and the BEAST 1.7 [J].
Drummond, Alexei J. ;
Suchard, Marc A. ;
Xie, Dong ;
Rambaut, Andrew .
MOLECULAR BIOLOGY AND EVOLUTION, 2012, 29 (08) :1969-1973
[9]   Genetic variability in the major capsid L1 protein of human papillomavirus type 16 (HPV-16) and 18 (HPV-18) [J].
Frati, E. ;
Bianchi, S. ;
Colzani, D. ;
Zappa, A. ;
Orlando, G. ;
Tanzi, E. .
INFECTION GENETICS AND EVOLUTION, 2011, 11 (08) :2119-2124
[10]   Phylogenetic, molecular and drug-sensitivity analysis of HA and NA genes of human H3N2 influenza A viruses in Guangdong, China, 2007-2011 [J].
Huang, P. ;
Liang, L-J. ;
Hou, N-M. ;
Zhang, X. ;
Su, W-Z. ;
Yu, S-Y. ;
Zhang, Y-H. ;
Wu, J. ;
Chen, W. Q. .
EPIDEMIOLOGY AND INFECTION, 2013, 141 (05) :1061-1069