Coarse-grained molecular simulations of the melting kinetics of small unilamellar vesicles

被引:16
|
作者
Patel, Lara A. [1 ]
Kindt, James T. [1 ]
机构
[1] Emory Univ, Dept Chem, 1515 Dickey Dr, Atlanta, GA 30322 USA
基金
美国国家科学基金会;
关键词
PHASE DIPALMITOYLPHOSPHATIDYLCHOLINE; PHOSPHOLIPID-BILAYERS; LECITHIN BILAYERS; LIPID-BILAYERS; MODEL; DYNAMICS; GEL; GROMACS; PERMEABILITY; MORPHOLOGY;
D O I
10.1039/c5sm02560e
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Simulations of small unilamellar lipid bilayer vesicles have been performed to model their response to an instantaneous rise in temperature, starting from an initial low-temperature structure, to temperatures near or above the main chain transition temperature. The MARTINI coarse-grained force-field was used to construct slabs of gel-phase DPPC bilayers, which were assembled into truncated icosahedral structures containing 13 165 or 31021 lipids. Equilibration at 280 K produced structures with several (5-8) domains, characterized by facets of lipids packed in the gel phase connected by disordered ridges. Instantaneous heating to final temperatures ranging from 290 K to 310 K led to partial or total melting over 500 ns trajectories, accompanied by changes in vesicle shape and the sizes and arrangements of remaining gel-phase domains. At temperatures that produced partial melting, the gel-phase lipid content of the vesicles followed an exponential decay, similar in form and timescale to the sub-microsecond phase of melting kinetics observed in recent ultrafast IR temperature-jump experiments. The changing rate of melting appears to be the outcome of a number of competing contributions, but changes in curvature stress arising from the expansion of the bilayer area upon melting are a major factor. The simulations give a more detailed picture of the changes that occur in frozen vesicles following a temperature jump, which will be of use for the interpretation of temperature-jump experiments on vesicles.
引用
收藏
页码:1765 / 1777
页数:13
相关论文
共 50 条
  • [21] Coarse-grained molecular dynamics simulations of ionic polymer networks
    Dirama, T. E.
    Varshney, V.
    Anderson, K. L.
    Shumaker, J. A.
    Johnson, J. A.
    MECHANICS OF TIME-DEPENDENT MATERIALS, 2008, 12 (03) : 205 - 220
  • [22] Modified Fast Multipole Method for Coarse-Grained Molecular Simulations
    Poursina, Mohammad
    BIOPHYSICAL JOURNAL, 2014, 106 (02) : 407A - 407A
  • [23] Ultra coarse-grained molecular dynamics simulations of lipid bilayers
    Carrillo, Jan Michael
    Katsaras, John
    Sumpter, Bobby
    Ashkar, Rana
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2018, 255
  • [24] Assembly of lipoproteins revealed by coarse-grained molecular dynamics simulations
    Shih, Amy Y.
    Freddolino, Peter L.
    Arkhipov, Anton
    Schulten, Klaus
    BIOPHYSICAL JOURNAL, 2007, : 250A - 250A
  • [25] A Coarse-Grained Model for Molecular Dynamics Simulations of Native Cellulose
    Wohlert, Jakob
    Berglund, Lars A.
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2011, 7 (03) : 753 - 760
  • [26] Coarse-grained molecular dynamics simulations of a rotating bacterial flagellum
    Arkhipov, Anton
    Freddolino, Peter L.
    Imada, Katsumi
    Namba, Keiichi
    Schulten, Klaus
    BIOPHYSICAL JOURNAL, 2006, 91 (12) : 4589 - 4597
  • [27] Coarse-Grained Molecular Dynamics Simulations of Membrane Trehalose Interactions
    Kapla, Jon
    Stevensson, Baltzar
    Maliniak, Arnold
    JOURNAL OF PHYSICAL CHEMISTRY B, 2016, 120 (36): : 9621 - 9631
  • [28] Improved Angle Potentials for Coarse-Grained Molecular Dynamics Simulations
    Bulacu, Monica
    Goga, Nicolae
    Zhao, Wei
    Rossi, Giulia
    Monticelli, Luca
    Periole, Xavier
    Tieleman, D. Peter
    Marrink, Siewert J.
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2013, 9 (08) : 3282 - 3292
  • [29] Coarse-grained molecular dynamics simulations of nanopatterning with multivalent inks
    Cieplak, Marek
    Thompson, Damien
    JOURNAL OF CHEMICAL PHYSICS, 2008, 128 (23):
  • [30] Coarse-grained molecular dynamics simulations of ionic polymer networks
    T. E. Dirama
    V. Varshney
    K. L. Anderson
    J. A. Shumaker
    J. A. Johnson
    Mechanics of Time-Dependent Materials, 2008, 12 : 205 - 220