Coarse-grained molecular simulations of the melting kinetics of small unilamellar vesicles

被引:16
作者
Patel, Lara A. [1 ]
Kindt, James T. [1 ]
机构
[1] Emory Univ, Dept Chem, 1515 Dickey Dr, Atlanta, GA 30322 USA
基金
美国国家科学基金会;
关键词
PHASE DIPALMITOYLPHOSPHATIDYLCHOLINE; PHOSPHOLIPID-BILAYERS; LECITHIN BILAYERS; LIPID-BILAYERS; MODEL; DYNAMICS; GEL; GROMACS; PERMEABILITY; MORPHOLOGY;
D O I
10.1039/c5sm02560e
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Simulations of small unilamellar lipid bilayer vesicles have been performed to model their response to an instantaneous rise in temperature, starting from an initial low-temperature structure, to temperatures near or above the main chain transition temperature. The MARTINI coarse-grained force-field was used to construct slabs of gel-phase DPPC bilayers, which were assembled into truncated icosahedral structures containing 13 165 or 31021 lipids. Equilibration at 280 K produced structures with several (5-8) domains, characterized by facets of lipids packed in the gel phase connected by disordered ridges. Instantaneous heating to final temperatures ranging from 290 K to 310 K led to partial or total melting over 500 ns trajectories, accompanied by changes in vesicle shape and the sizes and arrangements of remaining gel-phase domains. At temperatures that produced partial melting, the gel-phase lipid content of the vesicles followed an exponential decay, similar in form and timescale to the sub-microsecond phase of melting kinetics observed in recent ultrafast IR temperature-jump experiments. The changing rate of melting appears to be the outcome of a number of competing contributions, but changes in curvature stress arising from the expansion of the bilayer area upon melting are a major factor. The simulations give a more detailed picture of the changes that occur in frozen vesicles following a temperature jump, which will be of use for the interpretation of temperature-jump experiments on vesicles.
引用
收藏
页码:1765 / 1777
页数:13
相关论文
共 43 条
[1]   EFFECT OF BILAYER PHASE-TRANSITIONS ON VESICLE STRUCTURE AND ITS INFLUENCE ON THE KINETICS OF VIOLOGEN REDUCTION [J].
ANDERSSON, M ;
HAMMARSTROM, L ;
EDWARDS, K .
JOURNAL OF PHYSICAL CHEMISTRY, 1995, 99 (39) :14531-14538
[2]   GROMACS - A MESSAGE-PASSING PARALLEL MOLECULAR-DYNAMICS IMPLEMENTATION [J].
BERENDSEN, HJC ;
VANDERSPOEL, D ;
VANDRUNEN, R .
COMPUTER PHYSICS COMMUNICATIONS, 1995, 91 (1-3) :43-56
[3]   MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH [J].
BERENDSEN, HJC ;
POSTMA, JPM ;
VANGUNSTEREN, WF ;
DINOLA, A ;
HAAK, JR .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) :3684-3690
[4]   Pathways to faceting of vesicles [J].
Bowick, Mark J. ;
Sknepnek, Rastko .
SOFT MATTER, 2013, 9 (34) :8088-8095
[5]   Canonical sampling through velocity rescaling [J].
Bussi, Giovanni ;
Donadio, Davide ;
Parrinello, Michele .
JOURNAL OF CHEMICAL PHYSICS, 2007, 126 (01)
[6]   PERMEABILITY OF LIPID BILAYERS TO WATER AND IONIC SOLUTES [J].
DEAMER, DW ;
BRAMHALL, J .
CHEMISTRY AND PHYSICS OF LIPIDS, 1986, 40 (2-4) :167-188
[7]   Infrared studies of fast events in protein folding [J].
Dyer, RB ;
Gai, F ;
Woodruff, WH .
ACCOUNTS OF CHEMICAL RESEARCH, 1998, 31 (11) :709-716
[8]   FT-IR study of multilamellar lipid dispersions containing cholesteryl linoleate and dipalmitoylphosphatidylcholine [J].
Fraile, MV ;
Patrón-Gallardo, B ;
López-Rodríguez, G ;
Carmona, P .
CHEMISTRY AND PHYSICS OF LIPIDS, 1999, 97 (02) :119-128
[9]   Lipid organization and the morphology of solid-like domains in phase-separating binary lipid membranes [J].
Gordon, V. D. ;
Beales, P. A. ;
Zhao, Z. ;
Blake, C. ;
MacKintosh, F. C. ;
Olmsted, P. D. ;
Cates, M. E. ;
Egelhaaf, S. U. ;
Poon, W. C. K. .
JOURNAL OF PHYSICS-CONDENSED MATTER, 2006, 18 (32) :L415-L420
[10]   GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation [J].
Hess, Berk ;
Kutzner, Carsten ;
van der Spoel, David ;
Lindahl, Erik .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2008, 4 (03) :435-447