The complete chloroplast genome of the southern Chinese pine Pinus tabuliformis (Pinales: Pinaceae)

被引:2
|
作者
Yu, Zhongdong [1 ]
Peng, Shaobing [1 ]
Yang, Peihua [1 ]
机构
[1] Northwest A&F Univ, Coll Forestry, Taicheng Rd 3, Yangling 712100, Peoples R China
关键词
Complete chloroplast genome; phylogenetic analyses; Pinus tabuliformis; MITOCHONDRIAL GENOMES;
D O I
10.3109/19401736.2015.1106520
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The complete nucleotide sequence of Pinus tabuliformis chloroplast genome (cpDNA) was carried out using Illumina Hiseq 2500. The genome is 119 646 bp in length, and the overall base composition of H-strand is 30.6% for A, 19.3% for C, 19.2% for G and 30.9% for T. There are 116 genes in the cpDNA, including 74 protein-coding genes, four ribosomal RNA genes (four rRNA species), and 36 transfer RNA genes (20 tRNA species). Phylogenetic analyses of P. tabuliformis and other 12 species belonging to Pinales were carried out using MEGA 6.0 with Neighbor Joining methods. The sequences of P. tabuliformis were clustered in subfamily Pinaceae.
引用
收藏
页码:13 / 14
页数:2
相关论文
共 50 条
  • [1] The complete chloroplast genome of the Taiwan red pine Pinus taiwanensis (Pinaceae)
    Fang, Min-Feng
    Wang, Yu-Jin
    Zu, Yu-Meng
    Dong, Wan-Lin
    Wang, Ruo-Nan
    Deng, Tuan-Tuan
    Li, Zhong-Hu
    MITOCHONDRIAL DNA PART A, 2016, 27 (04) : 2732 - 2733
  • [2] The complete chloroplast genome of Pinus yunnanensis Franchet (Pinaceae)
    Qiu, Jing
    Chen, Lin
    Yi, Xiangui
    Li, Mingzhi
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 2600 - 2601
  • [3] Complete chloroplast genome sequence of Pinus tabuliformis var. henryi (Mast.) CTKuan 1983 (Pinaceae)
    Wang, Xi
    Zhao, Lin
    Yang, Xing-Xue
    Liu, Zhan-Lin
    MITOCHONDRIAL DNA PART B-RESOURCES, 2024, 9 (01): : 83 - 87
  • [4] Characterization of the complete chloroplast genome sequence of Pinus pumila (Pinaceae)
    Zeb, Umar
    Wang, Ruonan
    Dong, Pengbin
    Wang, Ning
    Zhang, Tingting
    Lin, Chenzi
    Wang, Xiaojuan
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 290 - 291
  • [5] The complete chloroplast genome sequence of Pinus cembra L. (Pinaceae)
    Schott, Thomas
    Schroeder, Hilke
    Schoening-Stierand, Katrin
    Kersten, Birgit
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 4202 - 4203
  • [6] The complete plastid genome of Bunge's pine Pinus bungeana (Pinaceae)
    Li, Zhong-Hu
    Zhu, Juan
    Yang, Yi-Xin
    Yang, Jie
    He, Jing-Wen
    Zhao, Gui-Fang
    MITOCHONDRIAL DNA PART A, 2016, 27 (04) : 2971 - 2972
  • [7] Chinese pine (Pinus tabuliformis Carr.)
    Niu, Shihui
    Li, Wei
    Li, Yue
    TRENDS IN GENETICS, 2022, 38 (04) : 409 - 411
  • [8] The complete chloroplast genome sequence of Pinus bhutanica (Pinaceae) and its phylogenetic implications
    Lv, Shiqi
    Chen, Jiao
    Li, Bingbing
    Fu, Taotao
    Song, Mingliang
    Zhang, Pengtao
    Liu, Kang
    Kou, Yixuan
    Wang, Jing
    MITOCHONDRIAL DNA PART B-RESOURCES, 2024, 9 (01): : 182 - 185
  • [9] The complete chloroplast genome of Pinus squamata (Pinaceae), a critically endangered species in China
    Ling, Li-Zhen
    Zhang, Shu-Dong
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 2668 - 2669
  • [10] Characterization of the complete chloroplast genome of Pinus wangii (Pinaceae), an endangered and endemic species in China
    Yang, Mei-Qing
    Du, Yan
    Ling, Li-Zhen
    MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (02): : 1195 - 1197