Electrostatic basis for enzyme catalysis

被引:1093
作者
Warshel, Arieh [1 ]
Sharma, Pankaz K. [1 ]
Kato, Mitsunori [1 ]
Xiang, Yun [1 ]
Liu, Hanbin [1 ]
Olsson, Mats H. M. [1 ]
机构
[1] Univ So Calif, Dept Chem, Los Angeles, CA 90089 USA
关键词
D O I
10.1021/cr0503106
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The nature and origin of the enormous power of enzymes was examined. First, the catalytic effect was defined by clarifying the importance of defining a proper reference state. In doing so, it was possible to define a chemistry-free reference state that involves the same mechanism in the corresponding enzymatic reaction. Second, the nature of the electrosatic contribution to enzyme catalysis was clarified by describing and quantifying the preorganization concept, demonstrating that enzyme active sites provide a preorganized polar environment that stabilizes the transition state much more than the corresponding environment in water. Finally, the proposal that the catalytic effect is primarily due to electrostatic effects was established by demonstrating that the contributions from other factors and proposals are relatively small.
引用
收藏
页码:3210 / 3235
页数:26
相关论文
共 247 条
[51]   Intrinsic dynamics of an enzyme underlies catalysis [J].
Eisenmesser, EZ ;
Millet, O ;
Labeikovsky, W ;
Korzhnev, DM ;
Wolf-Watz, M ;
Bosco, DA ;
Skalicky, JJ ;
Kay, LE ;
Kern, D .
NATURE, 2005, 438 (7064) :117-121
[52]   Prediction of functionally important residues based solely on the computed energetics of protein structure [J].
Elcock, AH .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 312 (04) :885-896
[53]   Computer simulation of primary kinetic isotope effects in the proposed rate-limiting step of the glyoxalase I catalyzed reaction [J].
Feierberg, I ;
Luzhkov, V ;
Åqvist, J .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (30) :22657-22662
[54]   The catalytic power of ketosteroid isomerase investigated by computer simulation [J].
Feierberg, I ;
Åqvist, J .
BIOCHEMISTRY, 2002, 41 (52) :15728-15735
[55]   Computational modeling of enzymatic keto-enol isomerization reactions [J].
Feierberg, I ;
Åqvist, J .
THEORETICAL CHEMISTRY ACCOUNTS, 2002, 108 (02) :71-84
[56]   A QM/MM exploration of the potential energy surface of pyruvate to lactate transformation catalyzed by LDH.: Improving the accuracy of semiempirical descriptions [J].
Ferrer, S ;
Ruiz-Pernía, JJ ;
Tuñón, I ;
Moliner, V ;
Garcia-Viloca, M ;
González-Lafont, A ;
Lluch, JM .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2005, 1 (04) :750-761
[57]  
Fersht A., 1999, STRUCTURE MECH PROTE
[58]   Simulating enzyme reactions: Challenges and perspectives [J].
Field, MJ .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2002, 23 (01) :48-58
[59]   INTRAMOLECULAR GENERAL-ACID AND ELECTROSTATIC CATALYSIS IN ACETAL HYDROLYSIS - HYDROLYSIS OF 2-(SUBSTITUTED PHENOXY)-6-CARBOXYTETRAHYDROPYRANS AND 2-ALKOXY-6-CARBOXYTETRAHYDROPYRANS [J].
FIFE, TH ;
JAFFE, SH ;
NATARAJAN, R .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1991, 113 (20) :7646-7653
[60]   A MECHANISM FOR ROTAMASE CATALYSIS BY THE FK506 BINDING-PROTEIN (FKBP) [J].
FISCHER, S ;
MICHNICK, S ;
KARPLUS, M .
BIOCHEMISTRY, 1993, 32 (50) :13830-13837