Morin was successful as a chemical modifier to improve the reactivity of the nanometer SiO2 surface in terms of selective binding and extraction of heavy metal ions. This new functionalized nanometer SiO2 (nanometer SiO2-morin) was used as an effective sorbent for the solid-phase extraction (SPE) of Cd(II), Cu(II), Ni(II), Pb(II), Zn(II) in solutions prior to its determination by inductively coupled plasma atomic emission spectrometry (ICP-AES). Experimental conditions for effective adsorption of trace levels of metal ions were optimized with respect to different experimental parameters using static and dynamic procedures in detail. The pH 4.0 was chosen as the optimum pH value for the separation of metal ions on the newly sorbent. Complete elution of the adsorbed metal ions from the nanometer SiO2-morin was carried out using 2.0 mL of 0.5 mol L-1 of HCl. Common coexisting ions did not interfere with the separation and determination at pH 4.0. The maximum static adsorption capacity of the sorbent at optimum conditions was found to be 22.36, 36.8, 40.37, 33.21 and 25.99 mg metal/g SiO2-morin for Cd(II), Cu(II), Ni(II), Pb(II) and Zn(II), respectively. The time for 95% sorption for Cu(II) and Ni(II) and 70% sorption for Cd(II), Pb(II) and Zn(II) was less than 2 min. The relative standard deviation (RSD) of the method under optimum conditions was lower than 5.0% (n = 11). The procedure was validated by analyzing the certified reference river sediment material (GBW 08301, China), the results obtained were in good agreement with standard values. The nanometer SiO2-morin was successfully employed in the separation and preconcentration of trace Cd(II), Cu(II), Ni(II), Pb(II) and Zn(II) from the biological and natural water samples yielding 75-folds concentration factor.