Negative Lack of association of TP73 with amyotrophic lateral sclerosis in a large cohort of cases

被引:2
作者
Dilliott, Allison A. [1 ]
Rouleau, Guy A. [1 ,2 ,3 ]
Farhan, Sali M. K. [1 ,2 ,3 ,4 ]
机构
[1] McGill Univ, Dept Neurol & Neurosurg, Montreal, PQ, Canada
[2] McGill Univ, Montreal Neurol Inst & Hosp, Dept Human Genet, Montreal, PQ, Canada
[3] McGill Univ, Montreal Neurol Inst & Hosp, Montreal, PQ, Canada
[4] McGill Univ, Montreal Neurol Inst & Hosp, Dept Neurol & Neurosurg, Montreal, PQ H4A 3J1, Canada
关键词
Amyotrophic lateral sclerosis; Large-scale sequencing; Gene burden analysis; TP73; GENE;
D O I
10.1016/j.neurobiolaging.2022.04.004
中图分类号
R592 [老年病学]; C [社会科学总论];
学科分类号
03 ; 0303 ; 100203 ;
摘要
A recent study suggested an association between rare, non-synonymous variants in the gene encoding tumor protein p73 (TP73) and amyotrophic lateral sclerosis (ALS) - a progressive, fatal neurodegenerative disease. The original association was based on a case-control analysis with relatively small sample size. While functional data were presented to substantiate these claims, it remains unclear whether the results demonstrate clinical significance; additionally, the modelled null alleles had been recently reported to cause a severe pediatric disorder characterized by impaired mucociliary clearance and lissencephaly. Here, we aimed to replicate the proposed genetic association between TP73 and ALS using the two largest publicly available ALS sequencing datasets as hosted by the ALS Knowledge Portal (n = 3864 cases and n = 7839 controls) and the Project MinE ALS browser (n = 4366 cases and n = 1832 controls) for a total of 8230 ALS cases and 9671 controls. We did not observe an enrichment of rare, protein-coding variants in the ALS cases and surprisingly identified a relatively large number of controls carrying rare, non-synonymous variants in TP73 (n = 65). Based on these results we conclude that TP73 most likely does not predispose to ALS.(c) 2022 Elsevier Inc. All rights reserved.
引用
收藏
页码:109 / 111
页数:3
相关论文
共 10 条
  • [1] Exome sequencing in amyotrophic lateral sclerosis implicates a novel gene, DNAJC7, encoding a heat-shock protein
    Farhan, Sali M. K.
    Howrigan, Daniel P.
    Abbott, Liam E.
    Klim, Joseph R.
    Topp, Simon D.
    Byrnes, Andrea E.
    Churchhouse, Claire
    Phatnani, Hemali
    Smith, Bradley N.
    Rampersaud, Evadnie
    Wu, Gang
    Wuu, Joanne
    Shatunov, Aleksey
    Iacoangeli, Alfredo
    Al Khleifat, Ahmad
    Mordes, Daniel A.
    Ghosh, Sulagna
    Eggan, Kevin
    Rademakers, Rosa
    McCauley, Jacob L.
    Schuele, Rebecca
    Zuchner, Stephan
    Benatar, Michael
    Taylor, J. Paul
    Nalls, Michael
    Gotkine, Marc
    Shaw, Pamela J.
    Morrison, Karen E.
    Al-Chalabi, Ammar
    Traynor, Bryan
    Shaw, Christopher E.
    Goldstein, David B.
    Harms, Matthew B.
    Daly, Mark J.
    Neale, Benjamin M.
    [J]. NATURE NEUROSCIENCE, 2019, 22 (12) : 1966 - +
  • [2] The mutational constraint spectrum quantified from variation in 141,456 humans
    Karczewski, Konrad J.
    Francioli, Laurent C.
    Tiao, Grace
    Cummings, Beryl B.
    Alfoldi, Jessica
    Wang, Qingbo
    Collins, Ryan L.
    Laricchia, Kristen M.
    Ganna, Andrea
    Birnbaum, Daniel P.
    Gauthier, Laura D.
    Brand, Harrison
    Solomonson, Matthew
    Watts, Nicholas A.
    Rhodes, Daniel
    Singer-Berk, Moriel
    England, Eleina M.
    Seaby, Eleanor G.
    Kosmicki, Jack A.
    Walters, Raymond K.
    Tashman, Katherine
    Farjoun, Yossi
    Banks, Eric
    Poterba, Timothy
    Wang, Arcturus
    Seed, Cotton
    Whiffin, Nicola
    Chong, Jessica X.
    Samocha, Kaitlin E.
    Pierce-Hoffman, Emma
    Zappala, Zachary
    O'Donnell-Luria, Anne H.
    Minikel, Eric Vallabh
    Weisburd, Ben
    Lek, Monkol
    Ware, James S.
    Vittal, Christopher
    Armean, Irina M.
    Bergelson, Louis
    Cibulskis, Kristian
    Connolly, Kristen M.
    Covarrubias, Miguel
    Donnelly, Stacey
    Ferriera, Steven
    Gabriel, Stacey
    Gentry, Jeff
    Gupta, Namrata
    Jeandet, Thibault
    Kaplan, Diane
    Llanwarne, Christopher
    [J]. NATURE, 2020, 581 (7809) : 434 - +
  • [3] Tissue-specific roles of p73 in development and homeostasis
    Nemajerova, Alice
    Moll, Ute M.
    [J]. JOURNAL OF CELL SCIENCE, 2019, 132 (19)
  • [4] TAp73 is a central transcriptional regulator of airway multiciliogenesis
    Nemajerova, Alice
    Kramer, Daniela
    Siller, Saul S.
    Herr, Christian
    Shomroni, Orr
    Pena, Tonatiuh
    Suazo, Cristina Gallinas
    Glaser, Katharina
    Wildung, Merit
    Steffen, Henrik
    Sriraman, Anusha
    Oberle, Fabian
    Wienken, Magdalena
    Hennion, Magali
    Vidal, Ramon
    Royen, Bettina
    Alevra, Mihai
    Schild, Detlev
    Bals, Robert
    Doenitz, Juergen
    Riedel, Dietmar
    Bonn, Stefan
    Takemaru, Ken-Ichi
    Moll, Ute M.
    Lize, Muriel
    [J]. GENES & DEVELOPMENT, 2016, 30 (11) : 1300 - 1312
  • [5] R Core Team, 2013, R: a language and environment for statistical computing. R Foundation for Statistical Computing
  • [6] Pathogenic Effect of TP73 Gene Variants in People With Amyotrophic Lateral Sclerosis
    Russell, Kristi L.
    Downie, Jonathan M.
    Gibson, Summer B.
    Tsetsou, Spyridoula
    Keefe, Matthew D.
    Duran, Jerry A.
    Figueroa, Karla P.
    Bromberg, Mark B.
    Murtaugh, L. Charles
    Bonkowsky, Joshua L.
    Pulst, Stefan M.
    Jorde, Lynn B.
    [J]. NEUROLOGY, 2021, 97 (03) : E225 - E235
  • [7] Project MinE: study design and pilot analyses of a large-scale whole-genome sequencing study in amyotrophic lateral sclerosis
    Van Rheenen, Wouter
    Pulit, Sara L.
    Dekker, Annelot M.
    Al Khleifat, Ahmad
    Brands, William J.
    Iacoangeli, Alfredo
    Kenna, Kevin P.
    Kavak, Ersen
    Kooyman, Maarten
    McLaughlin, Russell L.
    Middelkoop, Bas
    Moisse, Matthieu
    Schellevis, Raymond D.
    Shatunov, Aleksey
    Sproviero, William
    Tazelaar, Gijs H. P.
    Van der Spek, Rick A. A.
    Van Doormaal, Perry T. C.
    Van Eijk, Kristel R.
    Van Vugt, Joke
    Basak, A. Nazli
    Blair, Ian P.
    Glass, Jonathan D.
    Hardiman, Orla
    Hide, Winston
    Landers, John E.
    Mora, Jesus S.
    Morrison, Karen E.
    Newhouse, Stephen
    Robberecht, Wim
    Shaw, Christopher E.
    Shaw, Pamela J.
    Van Damme, Philip
    Van Es, Michael A.
    Wray, Naomi R.
    Al-Chalabi, Ammar
    Van den Berg, Leonard H.
    Veldink, Jan H.
    [J]. EUROPEAN JOURNAL OF HUMAN GENETICS, 2018, 26 (10) : 1537 - 1546
  • [8] Mutations in TP73 cause impaired mucociliary clearance and lissencephaly
    Wallmeier, Julia
    Bracht, Diana
    Alsaif, Hessa S.
    Dougherty, Gerard W.
    Olbrich, Heike
    Cindric, Sandra
    Dzietko, Mark
    Heyer, Christoph
    Teig, Norbert
    Thiels, Charlotte
    Faqeih, Eissa
    Al-Hashim, Aqeela
    Khan, Sameena
    Mogarri, Ibrahim
    Almannai, Mohammed
    Al Otaibi, Wadha
    Alkuraya, Fowzan S.
    Koerner-Rettberg, Cordula
    Omran, Heymut
    [J]. AMERICAN JOURNAL OF HUMAN GENETICS, 2021, 108 (07) : 1318 - 1329
  • [9] p73-deficient mice have neurological, pheromonal and inflammatory defects but lack spontaneous tumours
    Yang, A
    Walker, N
    Bronson, R
    Kaghad, M
    Oosterwegel, M
    Bonnin, J
    Vagner, C
    Bonnet, H
    Dikkes, P
    Sharpe, A
    McKeon, F
    Caput, D
    [J]. NATURE, 2000, 404 (6773) : 99 - 103
  • [10] Exploring genomic alteration in pediatric cancer using ProteinPaint
    Zhou, Xin
    Edmonson, Michael N.
    Wilkinson, Mark R.
    Patel, Aman
    Wu, Gang
    Liu, Yu
    Li, Yongjin
    Zhang, Zhaojie
    Rusch, Michael C.
    Parker, Matthew
    Becksfort, Jared
    Downing, James R.
    Zhang, Jinghui
    [J]. NATURE GENETICS, 2016, 48 (01) : 4 - 6