The DynaMine webserver: predicting protein dynamics from sequence

被引:113
作者
Cilia, Elisa [1 ,2 ]
Pancsa, Rita [3 ,4 ]
Tompa, Peter [2 ,3 ,4 ,5 ]
Lenaerts, Tom [1 ,2 ,6 ]
Vranken, Wim F. [2 ,3 ,4 ]
机构
[1] ULB, Dept Comp Sci, MLG, Brussels, Belgium
[2] ULB VUB, Interuniv Inst Bioinformat Brussels IB, Brussels, Belgium
[3] Vrije Univ Brussel, Struct Biol Brussels, Brussels, Belgium
[4] VIB, Dept Biol Struct, Brussels, Belgium
[5] Hungarian Acad Sci, Res Ctr Nat Sci, Inst Enzymol, Budapest, Hungary
[6] Vrije Univ Brussel, Dept Comp Sci, AI Lab, Brussels, Belgium
基金
比利时弗兰德研究基金会;
关键词
INTRINSICALLY UNSTRUCTURED PROTEINS; SECONDARY STRUCTURE; WEB SERVER; FLEXIBILITY; RECOGNITION; ACCURATE; REGIONS;
D O I
10.1093/nar/gku270
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Protein dynamics are important for understanding protein function. Unfortunately, accurate protein dynamics information is difficult to obtain: here we present the DynaMine webserver, which provides predictions for the fast backbone movements of proteins directly from their amino-acid sequence. DynaMine rapidly produces a profile describing the statistical potential for such movements at residue-level resolution. The predicted values have meaning on an absolute scale and go beyond the traditional binary classification of residues as ordered or disordered, thus allowing for direct dynamics comparisons between protein regions. Through this webserver, we provide molecular biologists with an efficient and easy to use tool for predicting the dynamical characteristics of any protein of interest, even in the absence of experimental observations. The prediction results are visualized and can be directly downloaded.
引用
收藏
页码:W264 / W270
页数:7
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