In this work we study the effects of the solvent interaction on the nonlinear dynamical structure of a DNA segment, by using a time-independent perturbation approach. Considering a well-known set of values for the spring constant (k) and the Morse (solvent) potential parameters D-n and a(n) (f(s) and lambda(s)), we investigate the denaturation temperature profiles of some DNA's thermodynamical functions, such as the stretching of the hydrogen bonds, the specific heat and the entropy. Besides a sharp thermal profile behavior of these functions, we observe also that the DNA's melting temperature decreases as the solvent potential increases. (C) 2014 Elsevier B.V. All rights reserved.
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Inst Max Von Laue Paul Langevin, F-38042 Grenoble 9, France
Ecole Normale Super Lyon, Phys Lab, CNRS UMR 5672, F-69364 Lyon 7, France
Columbia Univ, Dept Biol Sci, New York, NY 10027 USAInst Max Von Laue Paul Langevin, F-38042 Grenoble 9, France
Valle-Orero, J.
Wildes, A. R.
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Inst Max Von Laue Paul Langevin, F-38042 Grenoble 9, FranceInst Max Von Laue Paul Langevin, F-38042 Grenoble 9, France
Wildes, A. R.
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Theodorakopoulos, N.
Cuesta-Lopez, S.
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Ecole Normale Super Lyon, Phys Lab, CNRS UMR 5672, F-69364 Lyon 7, France
Univ Burgos, Burgos 09001, SpainInst Max Von Laue Paul Langevin, F-38042 Grenoble 9, France
Cuesta-Lopez, S.
Garden, J-L
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CNRS, F-38042 Grenoble, France
Univ Grenoble Alpes, Inst NEEL, F-38042 Grenoble, FranceInst Max Von Laue Paul Langevin, F-38042 Grenoble 9, France
Garden, J-L
Danilkin, S.
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ANSTO, Kirrawee Dc, NSW 2232, AustraliaInst Max Von Laue Paul Langevin, F-38042 Grenoble 9, France
Danilkin, S.
Peyrard, M.
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Ecole Normale Super Lyon, Phys Lab, CNRS UMR 5672, F-69364 Lyon 7, FranceInst Max Von Laue Paul Langevin, F-38042 Grenoble 9, France
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Univ Warsaw, Fac Math Informat & Mech, Inst Appl Math & Mech, Ul Banacha 2, PL-02097 Warsaw, PolandUniv Warsaw, Fac Math Informat & Mech, Inst Appl Math & Mech, Ul Banacha 2, PL-02097 Warsaw, Poland
Debowski, Mateusz
Lachowicz, Miroslaw
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Univ Warsaw, Fac Math Informat & Mech, Inst Appl Math & Mech, Ul Banacha 2, PL-02097 Warsaw, PolandUniv Warsaw, Fac Math Informat & Mech, Inst Appl Math & Mech, Ul Banacha 2, PL-02097 Warsaw, Poland
Lachowicz, Miroslaw
Szymanska, Zuzanna
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Polish Acad Sci, Inst Math, Ul Sniadeckich 8, PL-00656 Warsaw, Poland
Univ Warsaw, ICM, Ul Tyniecka 15-17, PL-02630 Warsaw, PolandUniv Warsaw, Fac Math Informat & Mech, Inst Appl Math & Mech, Ul Banacha 2, PL-02097 Warsaw, Poland