Thermal properties of a DNA denaturation with solvent interaction

被引:23
|
作者
Macedo, D. X. [1 ]
Guedes, I. [2 ]
Albuquerque, E. L. [3 ]
机构
[1] Inst Fed Educ Ciencia & Tecnol Ceara, Dept Ensino, BR-63700000 Crateus, CE, Brazil
[2] Univ Fed Ceara, Dept Fis, BR-60455760 Fortaleza, Ceara, Brazil
[3] Univ Fed Rio Grande do Norte, Dept Biofis & Farmacol, BR-59072970 Natal, RN, Brazil
关键词
Morse potential; Nonlinear dynamics; DNA segment; Thermodynamics properties; STATISTICAL-MECHANICS; NONLINEAR MODEL; DYNAMICS; TRANSITION; THERMODYNAMICS; SIMULATIONS; IONS;
D O I
10.1016/j.physa.2014.02.029
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
In this work we study the effects of the solvent interaction on the nonlinear dynamical structure of a DNA segment, by using a time-independent perturbation approach. Considering a well-known set of values for the spring constant (k) and the Morse (solvent) potential parameters D-n and a(n) (f(s) and lambda(s)), we investigate the denaturation temperature profiles of some DNA's thermodynamical functions, such as the stretching of the hydrogen bonds, the specific heat and the entropy. Besides a sharp thermal profile behavior of these functions, we observe also that the DNA's melting temperature decreases as the solvent potential increases. (C) 2014 Elsevier B.V. All rights reserved.
引用
收藏
页码:234 / 241
页数:8
相关论文
共 50 条
  • [1] Sharp DNA denaturation due to solvent interaction
    Weber, G
    EUROPHYSICS LETTERS, 2006, 73 (05): : 806 - 811
  • [2] Thermal denaturation of A-DNA
    Valle-Orero, J.
    Wildes, A. R.
    Theodorakopoulos, N.
    Cuesta-Lopez, S.
    Garden, J-L
    Danilkin, S.
    Peyrard, M.
    NEW JOURNAL OF PHYSICS, 2014, 16
  • [3] HYDROPHOBIC STACKING OF BASES AND THE SOLVENT DENATURATION OF DNA
    SINANOGLU, O
    ABDULNUR, S
    PHOTOCHEMISTRY AND PHOTOBIOLOGY, 1964, 3 (04) : 333 - 342
  • [4] Thermal Fluctuation Spectroscopy of DNA Thermal Denaturation
    Nagapriya, K. S.
    Raychaudhuri, A. K.
    BIOPHYSICAL JOURNAL, 2010, 99 (08) : 2666 - 2675
  • [5] THERMAL DENATURATION AND TEMPLATE PROPERTIES OF DNA COMPLEXES WITH PURIFIED HISTONE FRACTIONS
    SHIH, TY
    BONNER, J
    JOURNAL OF MOLECULAR BIOLOGY, 1970, 48 (03) : 469 - &
  • [6] Microscopic description of DNA thermal denaturation
    Debowski, Mateusz
    Lachowicz, Miroslaw
    Szymanska, Zuzanna
    APPLIED MATHEMATICS AND COMPUTATION, 2019, 361 : 47 - 60
  • [7] Thermal denaturation of a helicoidal DNA model
    Barbi, M
    Lepri, S
    Peyrard, M
    Theodorakopoulos, N
    PHYSICAL REVIEW E, 2003, 68 (06):
  • [8] THERMAL DENATURATION OF RAM SPERM DNA
    BEIL, RE
    GRAVES, CN
    JOURNAL OF ANIMAL SCIENCE, 1973, 37 (01) : 300 - 301
  • [9] Effect of diethylsulfoxide on the thermal denaturation of DNA
    Markarian, SA
    Asatryan, AM
    Grigoryan, KR
    Sargsyan, HR
    BIOPOLYMERS, 2006, 82 (01) : 1 - 5
  • [10] The time duration for DNA thermal denaturation
    Calvo, Gabriel F.
    Alvarez-Estrada, Ramon F.
    JOURNAL OF PHYSICS-CONDENSED MATTER, 2008, 20 (03)