Identification and validation of a miRNA-based prognostic signature for cervical cancer through an integrated bioinformatics approach

被引:14
作者
Qi, Yumei [1 ]
Lai, Yo-Liang [2 ,3 ]
Shen, Pei-Chun [4 ]
Chen, Fang-Hsin [5 ,6 ,7 ]
Lin, Li-Jie [8 ,9 ]
Wu, Heng-Hsiung [2 ,4 ,8 ,9 ,10 ]
Peng, Pei-Hua [11 ]
Hsu, Kai-Wen [4 ,10 ,12 ]
Cheng, Wei-Chung [2 ,4 ,8 ,9 ]
机构
[1] Nanjing Med Med Univ, Affiliated BenQ Hosp, Suzhou BenQ Med Ctr, Dept Obstet & Gynecol, Suzhou 215010, Jiangsu, Peoples R China
[2] China Med Univ, Grad Inst Biomed Sci, Taichung 40403, Taiwan
[3] China Med Univ Hosp, Dept Radiat Oncol, Taichung 40403, Taiwan
[4] China Med Univ, Res Ctr Canc Biol, Taichung 40403, Taiwan
[5] Chang Gung Univ, Dept Med Imaging & Radiol Sci, Taoyuan 33302, Taiwan
[6] Chang Gung Mem Hosp Linkou, Dept Radiat Oncol, Taoyuan 33302, Taiwan
[7] Chang Gung Univ, Chang Gung Mem Hosp, Inst Radiol Res, Taoyuan 33302, Taiwan
[8] China Med Univ, PhD Program Canc Biol & Drug Discovery, Taichung 40403, Taiwan
[9] Acad Sinica, Taichung 40403, Taiwan
[10] China Med Univ, Drug Dev Ctr, Taichung 40403, Taiwan
[11] Chang Gung Mem Hosp Linkou, Canc Genome Res Ctr, Taoyuan 33302, Taiwan
[12] China Med Univ, Inst New Drug Dev, Taichung 40403, Taiwan
关键词
SMRNA-SEQ DATABASE; TUMOR-SUPPRESSOR; RNA; MICRORNAS; ONCOMIR; PROGRESSION; EXPRESSION; CARCINOMA; RESOURCE; SURVIVAL;
D O I
10.1038/s41598-020-79337-4
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Cervical cancer is the fourth most common cancer in women worldwide. Increasing evidence has shown that miRNAs are related to the progression of cervical cancer. However, the mechanisms that affect the prognosis of cancer are still largely unknown. In the present study, we sought to identify miRNAs associated with poor prognosis of patient with cervical cancer, as well as the possible mechanisms regulated by them. The miRNA expression profiles and relevant clinical information of patients with cervical cancer were obtained from The Cancer Genome Atlas (TCGA). The selection of prognostic miRNAs was carried out through an integrated bioinformatics approach. The most effective miRNAs with synergistic and additive effects were selected for validation through in vitro experiments. Three miRNAs (miR-216b-5p, miR-585-5p, and miR-7641) were identified as exhibiting good performance in predicting poor prognosis through additive effects analysis. The functional enrichment analysis suggested that not only pathways traditionally involved in cancer but also immune system pathways might be important in regulating the outcome of the disease. Our findings demonstrated that a synergistic combination of three miRNAs may be associated, through their regulation of specific pathways, with very poor survival rates for patients with cervical cancer.
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页数:9
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