Imaging and Analysis of Cellular Locations in Three-Dimensional Tissue Models

被引:4
作者
Colomb, Warren [1 ]
Osmond, Matthew [2 ]
Durfee, Charles [1 ]
Krebs, Melissa D. [2 ]
Sarkar, Susanta K. [1 ]
机构
[1] Colorado Sch Mines, Dept Phys, Golden, CO 80401 USA
[2] Colorado Sch Mines, Dept Chem & Biol Engn, Golden, CO 80401 USA
关键词
multiview light sheet microscope; Poisson process; randomness of cellular distributions; LIGHT-SHEET MICROSCOPY; MULTIPHOTON MICROSCOPY; QUANTITATIVE-ANALYSIS; ALGINATE HYDROGELS; STEM-CELLS; IN-VITRO; MATRIX; RECONSTRUCTION; 2-PHOTON; CULTURE;
D O I
10.1017/S1431927619000102
中图分类号
T [工业技术];
学科分类号
08 ;
摘要
The absence of quantitative in vitro cell-extracellular matrix models represents an important bottleneck for basic research and human health. Randomness of cellular distributions provides an opportunity for the development of a quantitative in vitro model. However, quantification of the randomness of random cell distributions is still lacking. In this paper, we have imaged cellular distributions in an alginate matrix using a multiview light sheet microscope and developed quantification metrics of randomness by modeling it as a Poisson process, a process that has constant probability of occurring in space or time. We imaged fluorescently labeled human mesenchymal stem cells embedded in an alginate matrix of thickness greater than 5 mm with similar to 2.9 +/- 0.4 mu m axial resolution, the mean full width at half maximum of the axial intensity profiles of fluorescent particles. Simulated randomness agrees well with the experiments. Quantification of distributions and validation by simulations will enable quantitative study of cell-matrix interactions in tissue models.
引用
收藏
页码:753 / 761
页数:9
相关论文
共 77 条
[1]  
Ahrens MB, 2013, NAT METHODS, V10, P413, DOI [10.1038/NMETH.2434, 10.1038/nmeth.2434]
[2]  
Alexander N, 2000, Biostatistics, V1, P453, DOI 10.1093/biostatistics/1.4.453
[3]  
Andersen Therese, 2015, Microarrays (Basel), V4, P133, DOI 10.3390/microarrays4020133
[4]   Statistical Analysis of 3D Images Detects Regular Spatial Distributions of Centromeres and Chromocenters in Animal and Plant Nuclei [J].
Andrey, Philippe ;
Kieu, Kien ;
Kress, Clemence ;
Lehmann, Gaetan ;
Tirichine, Leila ;
Liu, Zichuan ;
Biot, Eric ;
Adenot, Pierre-Gael ;
Hue-Beauvais, Cathy ;
Houba-Herin, Nicole ;
Duranthon, Veronique ;
Devinoy, Eve ;
Beaujean, Nathalie ;
Gaudin, Valerie ;
Maurin, Yves ;
Debey, Pascale .
PLOS COMPUTATIONAL BIOLOGY, 2010, 6 (07) :27
[5]  
[Anonymous], 2013, MONOGRAPHS STAT APPL, DOI DOI 10.1201/B15326
[6]  
[Anonymous], 2016, CHAP HALL CRC INTERD
[7]  
[Anonymous], 1993, Appl. Statist
[8]   Biological rhythms - Circadian clocks limited by noise [J].
Barkai, N ;
Leibler, S .
NATURE, 2000, 403 (6767) :267-268
[9]   Fluctuations and quality of control in biological cells: Zero-order ultrasensitivity reinvestigated [J].
Berg, OG ;
Paulsson, J ;
Ehrenberg, M .
BIOPHYSICAL JOURNAL, 2000, 79 (03) :1228-1236
[10]  
Bidarra SJ, 2018, METHODS MOL BIOL