Non-syndromic hearing loss gene identification: A brief history and glimpse into the future

被引:77
作者
Vona, Barbara [1 ]
Nanda, Indrajit [1 ]
Hofrichter, Michaela A. H. [1 ]
Shehata-Dieler, Wafaa [2 ]
Haaf, Thomas [1 ]
机构
[1] Univ Wurzburg, Inst Human Genet, D-97074 Wurzburg, Germany
[2] Univ Hosp, Plast Aesthet & Reconstruct Surg, Dept Otorhinolaryngol, Comprehens Hearing Ctr, Wurzburg, Germany
关键词
Copy number variation (CNV); Deafness; GJB2; Homozygosity mapping; Linkage analysis; Missing heritability; Next generation sequencing (NGS); Non-syndromic hearing loss (NSHL); Positional cloning; AUTOSOMAL-DOMINANT DEAFNESS; HUMAN NONSYNDROMIC DEAFNESS; TARGETED GENOMIC CAPTURE; LINKED MIXED DEAFNESS; HAIR CELL STEREOCILIA; IMPAIRMENT LOCUS; RECESSIVE DEAFNESS; COPY NUMBER; LOSS MAPS; VESTIBULAR DYSFUNCTION;
D O I
10.1016/j.mcp.2015.03.008
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
From the first identified non-syndromic hearing loss gene in 1995, to those discovered in present day, the field of human genetics has witnessed an unparalleled revolution that includes the completion of the Human Genome Project in 2003 to the $1000 genome in 2014. This review highlights the classical and cutting-edge strategies for non-syndromic hearing loss gene identification that have been used throughout the twenty year history with a special emphasis on how the innovative breakthroughs in next generation sequencing technology have forever changed candidate gene approaches. The simplified approach afforded by next generation sequencing technology provides a second chance for the many linked loci in large and well characterized families that have been identified by linkage analysis but have presently failed to identify a causative gene. It also discusses some complexities that may restrict eventual candidate gene discovery and calls for novel approaches to answer some of the questions that make this simple Mendelian disorder so intriguing. (C) 2015 The Authors. Published by Elsevier Ltd.
引用
收藏
页码:260 / 270
页数:11
相关论文
共 183 条
[1]   The autosomal recessive nonsyndromic deafness locus DFNB72 is located on chromosome 19p13.3 [J].
Ain, Quratul ;
Nazli, Sabiha ;
Riazuddin, Saima ;
Jaleel, Ateeq-ul ;
Riazuddin, S. Amer ;
Zafar, Ahmad U. ;
Khan, Shaheen N. ;
Husnain, Tayyab ;
GriYth, Andrew J. ;
Ahmed, Zubair M. ;
Friedman, Thomas B. ;
Riazuddin, Sheikh .
HUMAN GENETICS, 2007, 122 (05) :445-450
[2]   Clinical impact of unclassified variants of the BRCA1 and BRCA2 genes [J].
Akbari, Mohammad R. ;
Zhang, Shiyu ;
Fan, Isabel ;
Royer, Robert ;
Li, Song ;
Risch, Harvey ;
McLaughlin, John ;
Rosen, Barry ;
Sun, Ping ;
Narod, Steven A. .
JOURNAL OF MEDICAL GENETICS, 2011, 48 (11) :783-786
[3]   The mapping of DFNB62, a new locus for autosomal recessive non-syndromic hearing impairment, to chromosome 12p13.2-p11.23 [J].
Ali, G ;
Santos, RLP ;
John, P ;
Wambangco, MAL ;
Lee, K ;
Ahmad, W ;
Leal, SM .
CLINICAL GENETICS, 2006, 69 (05) :429-433
[4]   Novel Autosomal Recessive Nonsyndromic Hearing Impairment Locus DFNB90 Maps to 7p22.1-p15.3 [J].
Ali, Ghazanfar ;
Lee, Kwanghyuk ;
Andrade, Paula B. ;
Basit, Sulman ;
Santos-Cortez, Regie Lyn P. ;
Chen, Leon ;
Jelani, Musharraf ;
Ansar, Muhammad ;
Ahmad, Wasim ;
Leal, Suzanne M. .
HUMAN HEREDITY, 2011, 71 (02) :106-112
[5]   DFNB86, a novel autosomal recessive non-syndromic deafness locus on chromosome 16p13.3 [J].
Ali, R. A. ;
Rehman, A. U. ;
Khan, S. N. ;
Husnain, T. ;
Riazuddin, S. ;
Friedman, T. B. ;
Ahmed, Z. M. ;
Riazuddin, S. .
CLINICAL GENETICS, 2012, 81 (05) :498-500
[6]   Personalized copy number and segmental duplication maps using next-generation sequencing [J].
Alkan, Can ;
Kidd, Jeffrey M. ;
Marques-Bonet, Tomas ;
Aksay, Gozde ;
Antonacci, Francesca ;
Hormozdiari, Fereydoun ;
Kitzman, Jacob O. ;
Baker, Carl ;
Malig, Maika ;
Mutlu, Onur ;
Sahinalp, S. Cenk ;
Gibbs, Richard A. ;
Eichler, Evan E. .
NATURE GENETICS, 2009, 41 (10) :1061-U29
[7]   DFNB44, a novel autosomal recessive non-syndromic hearing impairment locus, maps to chromosome 7p14.1-q11.22 [J].
Ansar, M ;
Chahrour, MH ;
Din, MAU ;
Arshad, M ;
Haque, S ;
Pham, TL ;
Yan, K ;
Ahmad, W ;
Leal, SM .
HUMAN HEREDITY, 2004, 57 (04) :195-199
[8]   Localization of a novel autosomal recessive non-syndromic hearing impairment locus (DFNB38) to 6q26-q27 in a consanguineous kindred from Pakistan [J].
Ansar, M ;
Ramzan, M ;
Pham, TL ;
Yan, K ;
Jamal, SM ;
Haque, S ;
Ahmad, W ;
Leal, SM .
HUMAN HEREDITY, 2003, 55 (01) :71-74
[9]   A new autosomal recessive nonsyndromic hearing impairment locus DFNB96 on chromosome 1p36.31-p36.13 [J].
Ansar, Muhammad ;
Lee, Kwanghyuk ;
Naqvi, Syed Kamran-ul-Hassan ;
Andrade, Paula B. ;
Basit, Sulman ;
Santos-Cortez, Regie Lyn P. ;
Ahmad, Wasim ;
Leal, Suzanne M. .
JOURNAL OF HUMAN GENETICS, 2011, 56 (12) :866-868
[10]   Clinical whole-exome sequencing: are we there yet? [J].
Atwal, Paldeep Singh ;
Brennan, Marie-Louise ;
Cox, Rachel ;
Niaki, Michael ;
Platt, Julia ;
Homeyer, Margaret ;
Kwan, Andrea ;
Parkin, Sylvie ;
Schelley, Susan ;
Slattery, Leah ;
Wilnai, Yael ;
Bernstein, Jonathan Adam ;
Enns, Gregory M. ;
Hudgins, Louanne .
GENETICS IN MEDICINE, 2014, 16 (09) :717-719