Genetic risk score constructed from common genetic variants is associated with cardiovascular disease risk in type 2 diabetes mellitus

被引:12
作者
Cheng, Chi-Fung [1 ,2 ]
Lin, Ying-Ju [2 ,3 ]
Lin, Mei-Chen [1 ]
Liang, Wen-Miin [1 ]
Chen, Ching-Chu [4 ]
Chen, Chien-Hsiun [3 ,5 ]
Wu, Jer-Yuarn [3 ,5 ]
Lin, Ting-Hsu [2 ]
Liao, Chiu-Chu [2 ]
Huang, Shao-Mei [2 ]
Hsieh, Ai-Ru [6 ]
Tsai, Fuu-Jen [2 ,3 ,7 ]
机构
[1] China Med Univ, Grad Inst Biostat, Sch Publ Hlth, Taichung, Taiwan
[2] China Med Univ Hosp, Dept Med Res, Genet Ctr, Taichung, Taiwan
[3] China Med Univ, Sch Chinese Med, Taichung, Taiwan
[4] China Med Univ Hosp, Div Endocrinol & Metab, Dept Med, Taichung, Taiwan
[5] Inst Biomed Sci, Taipei, Taiwan
[6] Tamkang Univ, Dept Stat, New Taipei 251, Taiwan
[7] Asia Univ, Dept Biotechnol & Bioinformat, Taichung 404, Taiwan
关键词
cardiovascular disease; cumulative effect; genetic risk score; genetic variant; type 2 diabetes mellitus;
D O I
10.1002/jgm.3305
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Background Patients with type 2 diabetes mellitus (T2DM) experience a two-fold increased risk of cardiovascular diseases. Genome-wide association studies (GWAS) have identified T2DM susceptibility genetic variants. Interestingly, the genetic variants associated with cardiovascular disease risk in T2DM Han Chinese remain to be elucidated. The present study aimed to investigate the genetic variants associated with cardiovascular disease risk in T2DM. Methods We performed bootstrapping, GWAS and an investigation of genetic variants associated with cardiovascular disease risk in a discovery T2DM cohort and in a replication cohort. The discovery cohort included 326 cardiovascular disease patients and 1209 noncardiovascular disease patients. The replication cohort included 68 cardiovascular disease patients and 317 noncardiovascular disease patients. The main outcome measures were genetic variants for genetic risk score (GRS) in cardiovascular disease risk in T2DM. Results In total, 35 genetic variants were associated with cardiovascular disease risk. A GRS was generated by combining risk alleles from these variants weighted by their estimated effect sizes (log odds ratio [OR]). T2DM patients with weighted GRS >= 12.63 had an approximately 15-fold increase in cardiovascular disease risk (odds ratio = 15.67, 95% confidence interval [CI] = 10.33-24.00) compared to patients with weighted GRS < 10.39. With the addition of weighted GRS, receiver-operating characteristic curves showed that area under the curve with conventional risk factors was improved from 0.719 (95% CI = 0.689-0.750) to 0.888 (95% CI = 0.866-0.910). Conclusions These 35 genetic variants are associated with cardiovascular disease risk in T2DM, alone and cumulatively. T2DM patients with higher levels of weighted genetic risk score have higher cardiovascular disease risks.
引用
收藏
页数:11
相关论文
共 48 条
[1]   Risk of stroke and transient ischaemic attack in patients with a diagnosis of resolved atrial fibrillation: retrospective cohort studies [J].
Adderley, Nicola J. ;
Nirantharakumar, Krishnarajah ;
Marshall, Tom .
BMJ-BRITISH MEDICAL JOURNAL, 2018, 361
[2]   Structure and Function of the Hypertension Variant A486V of G Protein-coupled Receptor Kinase 4 [J].
Allen, Samantha J. ;
Parthasarathy, Gopal ;
Darke, Paul L. ;
Diehl, Ronald E. ;
Ford, Rachael E. ;
Hall, Dawn L. ;
Johnson, Scott A. ;
Reid, John C. ;
Rickert, Keith W. ;
Shipman, Jennifer M. ;
Soisson, Stephen M. ;
Zuck, Paul ;
Munshi, Sanjeev K. ;
Lumb, Kevin J. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2015, 290 (33) :20360-20373
[3]   Classification and Diagnosis of Diabetes [J].
不详 .
DIABETES CARE, 2015, 38 :S8-S16
[4]   Fine Mapping of the 1p36 Deletion Syndrome Identifies Mutation of PRDM16 as a Cause of Cardiomyopathy [J].
Arndt, Anne-Karin ;
Schafer, Sebastian ;
Drenckhahn, Jorg-Detlef ;
Sabeh, M. Khaled ;
Plovie, Eva R. ;
Caliebe, Almuth ;
Klopocki, Eva ;
Musso, Gabriel ;
Werdich, Andreas A. ;
Kalwa, Hermann ;
Heinig, Matthias ;
Padera, Robert F. ;
Wassilew, Katharina ;
Bluhm, Julia ;
Harnack, Christine ;
Martitz, Janine ;
Barton, Paul J. ;
Greutmann, Matthias ;
Berger, Felix ;
Hubner, Norbert ;
Siebert, Reiner ;
Kramer, Hans-Heiner ;
Cook, Stuart A. ;
MacRae, Calum A. ;
Klaassen, Sabine .
AMERICAN JOURNAL OF HUMAN GENETICS, 2013, 93 (01) :67-77
[5]   Haploview: analysis and visualization of LD and haplotype maps [J].
Barrett, JC ;
Fry, B ;
Maller, J ;
Daly, MJ .
BIOINFORMATICS, 2005, 21 (02) :263-265
[6]   Diabetes and atherosclerosis - Epidemiology, pathophysiology, and management [J].
Beckman, JA ;
Creager, MA ;
Libby, P .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2002, 287 (19) :2570-2581
[7]   Prdm16 is required for normal palatogenesis in mice [J].
Bjork, Bryan C. ;
Turbe-Doan, Annick ;
Prysak, Mary ;
Herron, Bruce J. ;
Beier, David R. .
HUMAN MOLECULAR GENETICS, 2010, 19 (05) :774-789
[8]   GWAS and transcriptional analysis prioritize ITPR1 and CNTN4 for a serum uric acid 3p26 QTL in Mexican Americans [J].
Chittoor, Geetha ;
Kent, Jack W., Jr. ;
Almeida, Marcio ;
Puppala, Sobha ;
Farook, Vidya S. ;
Cole, Shelley A. ;
Haack, Karin ;
Goering, Harald H. H. ;
MacCluer, Jean W. ;
Curran, Joanne E. ;
Carless, Melanie A. ;
Johnson, Matthew P. ;
Moses, Eric K. ;
Almasy, Laura ;
Mahaney, Michael C. ;
Lehman, Donna M. ;
Duggirala, Ravindranath ;
Comuzzie, Anthony G. ;
Blangero, John ;
Voruganti, Venkata Saroja .
BMC GENOMICS, 2016, 17
[9]   Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians [J].
Cho, Yoon Shin ;
Chen, Chien-Hsiun ;
Hu, Cheng ;
Long, Jirong ;
Ong, Rick Twee Hee ;
Sim, Xueling ;
Takeuchi, Fumihiko ;
Wu, Ying ;
Go, Min Jin ;
Yamauchi, Toshimasa ;
Chang, Yi-Cheng ;
Kwak, Soo Heon ;
Ma, Ronald C. W. ;
Yamamoto, Ken ;
Adair, Linda S. ;
Aung, Tin ;
Cai, Qiuyin ;
Chang, Li-Ching ;
Chen, Yuan-Tsong ;
Gao, Yutang ;
Hu, Frank B. ;
Kim, Hyung-Lae ;
Kim, Sangsoo ;
Kim, Young Jin ;
Lee, Jeannette Jen-Mai ;
Lee, Nanette R. ;
Li, Yun ;
Liu, Jian Jun ;
Lu, Wei ;
Nakamura, Jiro ;
Nakashima, Eitaro ;
Ng, Daniel Peng-Keat ;
Tay, Wan Ting ;
Tsai, Fuu-Jen ;
Wong, Tien Yin ;
Yokota, Mitsuhiro ;
Zheng, Wei ;
Zhang, Rong ;
Wang, Congrong ;
So, Wing Yee ;
Ohnaka, Keizo ;
Ikegami, Hiroshi ;
Hara, Kazuo ;
Cho, Young Min ;
Cho, Nam H. ;
Chang, Tien-Jyun ;
Bao, Yuqian ;
Hedman, Asa K. ;
Morris, Andrew P. ;
McCarthy, Mark I. .
NATURE GENETICS, 2012, 44 (01) :67-U97
[10]   Interaction Between Poor Glycemic Control and 9p21 Locus on Risk of Coronary Artery Disease in Type 2 Diabetes [J].
Doria, Alessandro ;
Wojcik, Joanna ;
Xu, Rui ;
Gervino, Ernest V. ;
Hauser, Thomas H. ;
Johnstone, Michael T. ;
Nolan, David ;
Hu, Frank B. ;
Warram, James H. .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2008, 300 (20) :2389-2397