Proteomic definitions of basement membrane composition in health and disease

被引:101
作者
Randles, Michael J. [1 ,2 ]
Humphries, Martin J. [1 ]
Lennon, Rachel [1 ,2 ,3 ]
机构
[1] Univ Manchester, Fac Life Sci, Wellcome Trust Ctr Cell Matrix Res, Manchester, Lancs, England
[2] Univ Manchester, Fac Med & Human Sci, Inst Human Dev, Manchester, Lancs, England
[3] MAHSC, Cent Manchester Univ Hosp NHS Fdn Trust CMFT, Dept Paediat Nephrol, Manchester, Lancs, England
基金
英国惠康基金;
关键词
Extracellular matrix; Proteomics; Glycoproteomics; Degradomics; Mass spectrometry; Quantification; Fractionation; Enrichment; Bioinformatics; Systems biology; MASS-SPECTROMETRIC IDENTIFICATION; GLOMERULAR EXTRACELLULAR-MATRIX; PROTEIN N-TERMINI; COLLAGEN-IV; ALPORT-SYNDROME; IN-VIVO; PEPTIDES; LAMININ; NEPHROPATHY; TISSUE;
D O I
10.1016/j.matbio.2016.08.006
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Basement membranes are formed from condensed networks of extracellular matrix (ECM) proteins. These structures underlie all epithelial, mesothelial and endothelial sheets and provide an essential structural scaffold. Candidate-based investigations have established that predominant components of basement membranes are laminins, collagen type IV, nidogens and heparan sulphate proteoglycans. More recently, global proteomic approaches have been applied to investigate ECM and these analyses confirm tissue-specific ECM proteomes with a high degree of complexity. The proteomes consist of structural as well as regulatory ECM proteins such as proteases and growth factors. This review is focused on the proteomic analysis of basement membranes and illustrates how this approach can be used to build our understanding of ECM regulation in health and disease. Crown Copyright (C) 2016 Published by Elsevier B.V. All rights reserved.
引用
收藏
页码:12 / 28
页数:17
相关论文
共 94 条
  • [71] Podocan, a novel small leucine-rich repeat protein expressed in the sclerotic glomerular lesion of experimental HIV-associated nephropathy
    Ross, MD
    Bruggeman, LA
    Hanss, B
    Sunamoto, M
    Marras, D
    Klotman, ME
    Klotman, PE
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (35) : 33248 - 33255
  • [72] Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
    Ross, PL
    Huang, YLN
    Marchese, JN
    Williamson, B
    Parker, K
    Hattan, S
    Khainovski, N
    Pillai, S
    Dey, S
    Daniels, S
    Purkayastha, S
    Juhasz, P
    Martin, S
    Bartlet-Jones, M
    He, F
    Jacobson, A
    Pappin, DJ
    [J]. MOLECULAR & CELLULAR PROTEOMICS, 2004, 3 (12) : 1154 - 1169
  • [73] The "A Disintegrin And Metalloproteases" ADAM10 and ADAM17: Novel drug targets with therapeutic potential?
    Saftig, Paul
    Reiss, Karina
    [J]. EUROPEAN JOURNAL OF CELL BIOLOGY, 2011, 90 (6-7) : 527 - 535
  • [74] Cell surface engineering by a modified Staudinger reaction
    Saxon, E
    Bertozzi, CR
    [J]. SCIENCE, 2000, 287 (5460) : 2007 - 2010
  • [75] Time- and compartment-resolved proteome profiling of the extracellular niche in lung injury and repair
    Schiller, Herbert B.
    Fernandez, Isis E.
    Burgstaller, Gerald
    Schaab, Christoph
    Scheltema, Richard A.
    Schwarzmayr, Thomas
    Strom, Tim M.
    Eickelberg, Oliver
    Mann, Matthias
    [J]. MOLECULAR SYSTEMS BIOLOGY, 2015, 11 (07)
  • [76] Matrix Metalloproteinase 10 Degradomics in Keratinocytes and Epidermal Tissue Identifies Bioactive Substrates With Pleiotropic Functions
    Schlage, Pascal
    Kockmann, Tobias
    Sabino, Fabio
    Kizhakkedathu, Jayachandran N.
    auf dem Keller, Ulrich
    [J]. MOLECULAR & CELLULAR PROTEOMICS, 2015, 14 (12) : 3234 - 3246
  • [77] Monitoring matrix metalloproteinase activity at the epidermal-dermal interface by SILAC-iTRAQ-TAILS
    Schlage, Pascal
    Kockmann, Tobias
    Kizhakkedathu, Jayachandran N.
    Keller, Ulrich Auf Dem
    [J]. PROTEOMICS, 2015, 15 (14) : 2491 - 2502
  • [78] Mass spectrometric sequencing of proteins from silver stained polyacrylamide gels
    Shevchenko, A
    Wilm, M
    Vorm, O
    Mann, M
    [J]. ANALYTICAL CHEMISTRY, 1996, 68 (05) : 850 - 858
  • [79] SIEGAL G P, 1981, Invasion and Metastasis, V1, P54
  • [80] Quantitative proteomic analysis by accurate mass retention time pairs
    Silva, JC
    Denny, R
    Dorschel, CA
    Gorenstein, M
    Kass, IJ
    Li, GZ
    McKenna, T
    Nold, MJ
    Richardson, K
    Young, P
    Geromanos, S
    [J]. ANALYTICAL CHEMISTRY, 2005, 77 (07) : 2187 - 2200