X-ray scattering experiments with high-flux X-ray source coupled rapid mixing microchannel device and their potential for high-flux neutron scattering investigations

被引:12
作者
Jain, R. [1 ]
Petri, M. [1 ]
Kirschbaum, S. [1 ]
Feindt, H. [2 ]
Steltenkamp, S. [2 ]
Sonnenkalb, S. [1 ]
Becker, S. [3 ]
Griesinger, C. [3 ]
Menzel, A. [4 ]
Burg, T. P. [1 ]
Techert, S. [1 ,5 ]
机构
[1] MPI BPC, D-37077 Gottingen, Germany
[2] Ctr Adv European Studies & Res Caesar, D-53175 Bonn, Germany
[3] MPI BPC, NMR Based Struct Biol, D-37077 Gottingen, Germany
[4] Paul Scherrer Inst, CH-5232 Villigen, Switzerland
[5] DESY, Photon Res Div, D-22607 Hamburg, Germany
关键词
SMALL-ANGLE SCATTERING; STRUCTURAL-CHARACTERIZATION; SYNCHROTRON-RADIATION; UNFOLDED UBIQUITIN; PROTEINS; SPECTROSCOPY; KINETICS; CONFORMATION; DIFFRACTION; ENSEMBLE;
D O I
10.1140/epje/i2013-13109-9
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Small-angle X-ray scattering provides global, shape-sensitive structural information about macromolecules in solution. Its extension to time dimension in the form of time-resolved SAXS investigations and combination with other time-resolved biophysical methods contributes immensely to the study of protein dynamics. TR-SAXS can also provide unique information about the global structures of transient intermediates during protein dynamics. An experimental set-up with low protein consumption is essential for an extensive use of TR-SAXS experiments on protein dynamics. In this direction, a newly developed 20-microchannel microfluidic continuous-flow mixer was combined with SAXS. With this set-up, we demonstrate ubiquitin unfolding dynamics after rapid mixing with the chaotropic agent Guanidinium-HCl within milliseconds using only similar to 40 nanoliters of the protein sample per scattering image. It is suggested that, in the future, this new TR-SAXS platform will help to increase the use of time-resolved small-angle X-ray scattering, wide-angle X-ray scattering and neutron scattering experiments for studying protein dynamics in the early millisecond regime. The potential research field for this set-up includes protein folding, protein misfolding, aggregation in amyloidogenic diseases, function of intrinsically disordered proteins and various protein-ligand interactions.
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页数:9
相关论文
共 48 条
[1]   Conformational landscape of cytochrome c folding studied by microsecond-resolved small-angle x-ray scattering [J].
Akiyama, S ;
Takahashi, S ;
Kimura, T ;
Ishimori, K ;
Morishima, I ;
Nishikawa, Y ;
Fujisawa, T .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (03) :1329-1334
[2]   Structural characterization of flexible proteins using small-angle X-ray scattering [J].
Bernado, Pau ;
Mylonas, Efstratios ;
Petoukhov, Maxim V. ;
Blackledge, Martin ;
Svergun, Dmitri I. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (17) :5656-5664
[3]   Kinetics of lysozyme refolding: Structural characterization of a non-specifically collapsed state using time-resolved X-ray scattering [J].
Chen, LL ;
Wildegger, G ;
Kiefhaber, T ;
Hodgson, KO ;
Doniach, S .
JOURNAL OF MOLECULAR BIOLOGY, 1998, 276 (01) :225-237
[4]   Conformational changes during the nanosecond-to-millisecond unfolding of ubiquitin [J].
Chung, HS ;
Khalil, M ;
Smith, AW ;
Ganim, Z ;
Tokmakoff, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (03) :612-617
[5]   Changes in biomolecular conformation seen by small angle X-ray scattering [J].
Doniach, S .
CHEMICAL REVIEWS, 2001, 101 (06) :1763-1778
[6]   Modeling the hydration of proteins: prediction of structural and hydrodynamic parameters from X-ray diffraction and scattering data [J].
Durchschlag, H ;
Zipper, P .
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2003, 32 (05) :487-502
[7]   Accessing ns-μs side chain dynamics in ubiquitin with methyl RDCs [J].
Fares, Christophe ;
Lakomek, Nils-Alexander ;
Walter, Korvin F. A. ;
Frank, Benedikt T. C. ;
Meiler, Jens ;
Becker, Stefan ;
Griesinger, Christian .
JOURNAL OF BIOMOLECULAR NMR, 2009, 45 (1-2) :23-44
[8]   Quantitative Modelfree Analysis of Urea Binding to Unfolded Ubiquitin Using a Combination of Small Angle X-ray and Neutron Scattering [J].
Gabel, Frank ;
Jensen, Malene Ringkjobing ;
Zaccai, Giuseppe ;
Blackledge, Martin .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2009, 131 (25) :8769-+
[9]   Ultrafast microfluidic mixer with three-dimensional flow focusing for studies of biochemical kinetics [J].
Gambin, Yann ;
Simonnet, Claire ;
VanDelinder, Virginia ;
Deniz, Ashok ;
Groisman, Alex .
LAB ON A CHIP, 2010, 10 (05) :598-609
[10]  
Glatter O., 1982, SMALL ANGLE XRAY SCA