Repetitive genomic elements and overall DNA methylation changes in acute myeloid and childhood B-cell lymphoblastic leukemia patients

被引:17
作者
Bujko, Mateusz [1 ,2 ]
Musialik, Ewa [1 ,2 ]
Olbromski, Rafal [3 ]
Przestrzelska, Marta [4 ]
Libura, Marta [4 ]
Pastwinska, Anna [4 ]
Juszczynski, Przemyslaw [5 ]
Zwierzchowski, Lech [3 ]
Baranowski, Pawel [6 ]
Siedlecki, Janusz Aleksander [1 ,2 ]
机构
[1] Maria Sklodowska Curie Mem Canc Ctr, Dept Mol & Translat Oncol, PL-02781 Warsaw, Poland
[2] Inst Oncol, PL-02781 Warsaw, Poland
[3] Inst Genet & Anim Breeding, Dept Mol Biol, Jastrzebiec, Poland
[4] Med Univ Warsaw, Dept Hematol Oncol & Internal Dis, Warsaw, Poland
[5] Inst Hematol & Transfus Med, Dept Diagnost Hematol, Warsaw, Poland
[6] Marian Weiss Mem Mazovia Rehabil Ctr, Neuroorthoped Dept, Konstancin Jeziorna, Poland
关键词
DNA methylation; LINE-1; ALU; AML; B-cell ALL; Leukemia; HEMATOPOIETIC DIFFERENTIATION; PROGENITOR CELLS; HYPOMETHYLATION; MUTATIONS; PATTERNS; TET2; ALU; AML; HYPERMETHYLATION; CLASSIFICATION;
D O I
10.1007/s12185-014-1592-0
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Aberrant epigenetic regulation is a hallmark of neoplastic cells. Increased DNA methylation of individual genes' promoter regions and decreases in overall DNA methylation level are both generally observed in cancer. In solid tumors, this global DNA hypomethylation is related to reduced methylation of repeated DNA elements (REs) and contributes to genome instability. The aim of the present study was to assess methylation level of LINE-1 and ALU REs and total 5-methylcytosine (5metC) content in adult acute myeloid leukemia (AML) (n = 58), childhood B-cell acute lymphoblastic leukemia (ALL) (n = 32), as the most frequent acute leukemias in two age categories and in normal adult bone marrow and children's blood samples. DNA pyrosequencing and ELISA assays were used, respectively. Global DNA hypomethylation was not observed in leukemia patients. Results revealed higher DNA methylation of LINE-1 in AML and ALL samples compared to corresponding normal controls. Elevated methylation of ALU and overall 5metC level were also observed in B-cell ALL patients. Differences of REs and global DNA methylation between AML cytogenetic-risk groups were observed, with the lowest methylation levels in intermediate-risk/ cytogenetically normal patients. B-cell ALL is characterized by the highest DNA methylation level compared to AML and controls and overall DNA methylation is correlated with leukocyte count.
引用
收藏
页码:79 / 87
页数:9
相关论文
共 40 条
[1]   ALU and LINE-1 hypomethylations in multistep gastric carcinogenesis and their prognostic implications [J].
Bae, Jeong Mo ;
Shin, So-Hyun ;
Kwon, Hyeong-Ju ;
Park, Seog-Yun ;
Kook, Myeong Cherl ;
Kim, Young-Woo ;
Cho, Nam-Yun ;
Kim, Nayoung ;
Kim, Tae-You ;
Kim, Donguk ;
Kang, Gyeong Hoon .
INTERNATIONAL JOURNAL OF CANCER, 2012, 131 (06) :1323-1331
[2]   Genome-wide promoter DNA methylation dynamics of human hematopoietic progenitor cells during differentiation and aging [J].
Bocker, Michael T. ;
Hellwig, Isabelle ;
Breiling, Achim ;
Eckstein, Volker ;
Ho, Anthony D. ;
Lyko, Frank .
BLOOD, 2011, 117 (19) :E182-E189
[3]   Decline in genomic DNA methylation through aging in a cohort of elderly subjects [J].
Bollati, Valentina ;
Schwartz, Joel ;
Wright, Robert ;
Litonjua, Augusto ;
Tarantini, Letizia ;
Suh, Helen ;
Sparrow, David ;
Vokonas, Pantel ;
Baccarelli, Andrea .
MECHANISMS OF AGEING AND DEVELOPMENT, 2009, 130 (04) :234-239
[4]   DNA methylation protects hematopoietic stem cell multipotency from myeloerythroid restriction [J].
Broeske, Ann-Marie ;
Vockentanz, Lena ;
Kharazi, Shabnam ;
Huska, Matthew R. ;
Mancini, Elena ;
Scheller, Marina ;
Kuhl, Christiane ;
Enns, Andreas ;
Prinz, Marco ;
Jaenisch, Rudolf ;
Nerlov, Claus ;
Leutz, Achim ;
Andrade-Navarro, Miguel A. ;
Jacobsen, Sten Eirik W. ;
Rosenbauer, Frank .
NATURE GENETICS, 2009, 41 (11) :1207-1215
[5]   A promoter DNA demethylation landscape of human hematopoietic differentiation [J].
Calvanese, Vincenzo ;
Fernandez, Agustin F. ;
Urdinguio, Rocio G. ;
Suarez-Alvarez, Beatriz ;
Mangas, Cristina ;
Perez-Garcia, Vicente ;
Bueno, Clara ;
Montes, Rosa ;
Ramos-Mejia, Veronica ;
Martinez-Camblor, Pablo ;
Ferrero, Cecilia ;
Assenov, Yassen ;
Bock, Christoph ;
Menendez, Pablo ;
Clara Carrera, Ana ;
Lopez-Larrea, Carlos ;
Fraga, Mario F. .
NUCLEIC ACIDS RESEARCH, 2012, 40 (01) :116-131
[6]   DNA Methylation of Cancer Genome [J].
Cheung, Hoi-Hung ;
Lee, Tin-Lap ;
Rennert, Owen M. ;
Chan, Wai-Yee .
BIRTH DEFECTS RESEARCH PART C-EMBRYO TODAY-REVIEWS, 2009, 87 (04) :335-350
[7]   Hypermethylation of CpG island loci and hypomethylation of LINE-I and Alu repeats in prostate adenocarcinoma and their relationship to clinicopathological features [J].
Cho, N-Y ;
Kim, B-H ;
Yoo, E. J. ;
Moon, K. C. ;
Cho, Y-M ;
Kim, D. ;
Kang, G. H. .
JOURNAL OF PATHOLOGY, 2007, 211 (03) :269-277
[8]   Hypomethylation of LINE-1 and Alu in well-differentiated neuroendocrine tumors (pancreatic endocrine tumors and carcinoid tumors) [J].
Choi, In-Seon ;
Estecio, Marcos R. H. ;
Nagano, Yasuhiko ;
Kim, Do Ha ;
White, Jill A. ;
Yao, James C. ;
Issa, Jean-Pierre J. ;
Rashid, Asif .
MODERN PATHOLOGY, 2007, 20 (07) :802-810
[9]   Aging and Environmental Exposures Alter Tissue-Specific DNA Methylation Dependent upon CpG Island Context [J].
Christensen, Brock C. ;
Houseman, E. Andres ;
Marsit, Carmen J. ;
Zheng, Shichun ;
Wrensch, Margaret R. ;
Wiemels, Joseph L. ;
Nelson, Heather H. ;
Karagas, Margaret R. ;
Padbury, James F. ;
Bueno, Raphael ;
Sugarbaker, David J. ;
Yeh, Ru-Fang ;
Wiencke, John K. ;
Kelsey, Karl T. .
PLOS GENETICS, 2009, 5 (08)
[10]   Mutation in TET2 in Myeloid Cancers [J].
Delhommeau, Francois ;
Dupont, Sabrina ;
Della Valle, Veronique ;
James, Chloe ;
Trannoy, Severine ;
Masse, Aline ;
Kosmider, Olivier ;
Le Couedic, Jean-Pierre ;
Robert, Fabienne ;
Alberdi, Antonio ;
Lecluse, Yann ;
Plo, Isabelle ;
Dreyfus, Francois J. ;
Marzac, Christophe ;
Casadevall, Nicole ;
Lacombe, Catherine ;
Romana, Serge P. ;
Dessen, Philippe ;
Soulier, Jean ;
Viguie, Franck ;
Fontenay, Michaela ;
Vainchenker, William ;
Bernard, Olivier A. .
NEW ENGLAND JOURNAL OF MEDICINE, 2009, 360 (22) :2289-2301