Identification of the miRNA-target gene regulatory network in intracranial aneurysm based on microarray expression data

被引:8
作者
Wang, Kezhen [1 ]
Wang, Xinmin [1 ]
Lv, Hongzhu [1 ]
Cui, Chengzhi [1 ]
Leng, Jiyong [1 ]
Xu, Kai [2 ]
Yu, Guosong [2 ]
Chen, Jianwei [2 ]
Cong, Peiyu [1 ]
机构
[1] Dalian Med Univ, Dalian Municipal Cent Hosp, Dept Neurosurg, 826 Xinan Rd, Dalian 116033, Liaoning, Peoples R China
[2] Dalian Med Univ, Dalian Med Univ Grad Sch, Dalian 116044, Liaoning, Peoples R China
关键词
mRNA expression data; miRNA expression data; intracranial aneurysms; regulatory network; miRNA target genes; COFFIN-LOWRY SYNDROME; SUBARACHNOID HEMORRHAGE; PROFILES; MICRORNAS; GLIOBLASTOMA; GENOMICS; PATHOGENESIS; DISCOVERY; CARCINOMA; BIOLOGY;
D O I
10.3892/etm.2017.4378
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Intracranial aneurysm (IA) remains one of the most devastating neurological conditions. However, the pathophysiology of IA formation and rupture still remains unclear. The purpose of the present study was to identify the crucial microRNA (miRNA/miR) and genes involved in IAs and elucidate the mechanisms underlying the development of IAs. In the present study, novel miRNA regulation activities in IAs were investigated through the integration of public gene expression data of miRNA and mRNA using the Gene Expression Omnibus database, combined with bioinformatics prediction. A total of 15 differentially expressed miRNA and 1,447differentially expressed mRNA between IAs and controls were identified. A number of miRNA-target gene pairs (770), whose expression levels were inversely correlated, were used to construct a regulatory network of miRNA-target genes in IAs. The biological functions and pathways of these target genes were revealed to be associated with IAs. Specific miRNA and genes, such as hsa-let-7f, hsa-let-7d, hsa-miR-7, RPS6KA3, TSC1 and IGF1 may possess key roles in the development of IAs. The integrated analysis in the present study may provide insights into the understanding of underlying molecular mechanisms of IAs and novel therapeutic targets.
引用
收藏
页码:3239 / 3248
页数:10
相关论文
共 45 条
  • [21] An in silico analysis of dynamic changes in microRNA expression profiles in stepwise development of nasopharyngeal carcinoma
    Luo, Zhaohui
    Zhang, Liyang
    Li, Zheng
    Li, Xiayu
    Li, Gang
    Yu, Haibo
    Jiang, Chen
    Dai, Yafei
    Guo, Xiaofang
    Xiang, Juanjuan
    Li, Guiyuan
    [J]. BMC MEDICAL GENOMICS, 2012, 5
  • [22] Marchese E, 2010, J BIOL REG HOMEOS AG, V24, P185
  • [23] Gene Expression Profiling Reveals Distinct Molecular Signatures Associated With the Rupture of Intracranial Aneurysm
    Nakaoka, Hirofumi
    Tajima, Atsushi
    Yoneyama, Taku
    Hosomichi, Kazuyoshi
    Kasuya, Hidetoshi
    Mizutani, Tohru
    Inoue, Ituro
    [J]. STROKE, 2014, 45 (08) : 2239 - 2245
  • [24] Changes in case fatality of aneurysmal subarachnoid haemorrhage overtime, according to age, sex, and region: a meta-analysis
    Nieuwkamp, Dennis J.
    Setz, Larissa E.
    Algra, Ale
    Linn, Francisca H. H.
    de Rooij, Nicolien K.
    Rinkel, Gabriel E.
    [J]. LANCET NEUROLOGY, 2009, 8 (07) : 635 - 642
  • [25] The Historical Coffin-Lowry Syndrome Family Revisited: Identification of Two Novel Mutations of RPS6KA3 in Three Male Patients
    Nishimoto, Hiromi Koso
    Ha, Kyungsoo
    Jones, Julie R.
    Dwivedi, Alka
    Cho, Hyun-Min
    Layman, Lawrence C.
    Kim, Hyung-Goo
    [J]. AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2014, 164 (09) : 2172 - 2179
  • [26] Gene Expression Profiles in Human Ruptured and Unruptured Intracranial Aneurysms What Is the Role of Inflammation?
    Pera, Joanna
    Korostynski, Michal
    Krzyszkowski, Tadeusz
    Czopek, Jacek
    Slowik, Agnieszka
    Dziedzic, Tomasz
    Piechota, Marcin
    Stachura, Krzysztof
    Moskala, Marek
    Przewlocki, Ryszard
    Szczudlik, Andrzej
    [J]. STROKE, 2010, 41 (02) : 224 - 231
  • [27] MiR-191 Regulates Primary Human Fibroblast Proliferation and Directly Targets Multiple Oncogenes
    Polioudakis, Damon
    Abell, Nathan S.
    Iyer, Vishwanath R.
    [J]. PLOS ONE, 2015, 10 (05):
  • [28] Bioconductor: An open source framework for bioinformatics and computational biology
    Reimers, Mark
    Carey, Vincent J.
    [J]. DNA MICROARRAYS, PART B: DATABASES AND STATISTICS, 2006, 411 : 119 - +
  • [29] Identifying differentially expressed genes using false discovery rate controlling procedures
    Reiner, A
    Yekutieli, D
    Benjamini, Y
    [J]. BIOINFORMATICS, 2003, 19 (03) : 368 - 375
  • [30] Pathogenesis of intracranial aneurysm is mediated by proinflammatory cytokine TNFA and IFNG and through stochastic regulation of IL10 and TGFB1 by comorbid factors
    Sathyan, Sanish
    Koshy, Linda V.
    Srinivas, Lekshmi
    Easwer, H. V.
    Premkumar, S.
    Nair, Suresh
    Bhattacharya, R. N.
    Alapatt, Jacob P.
    Banerjee, Moinak
    [J]. JOURNAL OF NEUROINFLAMMATION, 2015, 12