Identification of the miRNA-target gene regulatory network in intracranial aneurysm based on microarray expression data

被引:8
作者
Wang, Kezhen [1 ]
Wang, Xinmin [1 ]
Lv, Hongzhu [1 ]
Cui, Chengzhi [1 ]
Leng, Jiyong [1 ]
Xu, Kai [2 ]
Yu, Guosong [2 ]
Chen, Jianwei [2 ]
Cong, Peiyu [1 ]
机构
[1] Dalian Med Univ, Dalian Municipal Cent Hosp, Dept Neurosurg, 826 Xinan Rd, Dalian 116033, Liaoning, Peoples R China
[2] Dalian Med Univ, Dalian Med Univ Grad Sch, Dalian 116044, Liaoning, Peoples R China
关键词
mRNA expression data; miRNA expression data; intracranial aneurysms; regulatory network; miRNA target genes; COFFIN-LOWRY SYNDROME; SUBARACHNOID HEMORRHAGE; PROFILES; MICRORNAS; GLIOBLASTOMA; GENOMICS; PATHOGENESIS; DISCOVERY; CARCINOMA; BIOLOGY;
D O I
10.3892/etm.2017.4378
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Intracranial aneurysm (IA) remains one of the most devastating neurological conditions. However, the pathophysiology of IA formation and rupture still remains unclear. The purpose of the present study was to identify the crucial microRNA (miRNA/miR) and genes involved in IAs and elucidate the mechanisms underlying the development of IAs. In the present study, novel miRNA regulation activities in IAs were investigated through the integration of public gene expression data of miRNA and mRNA using the Gene Expression Omnibus database, combined with bioinformatics prediction. A total of 15 differentially expressed miRNA and 1,447differentially expressed mRNA between IAs and controls were identified. A number of miRNA-target gene pairs (770), whose expression levels were inversely correlated, were used to construct a regulatory network of miRNA-target genes in IAs. The biological functions and pathways of these target genes were revealed to be associated with IAs. Specific miRNA and genes, such as hsa-let-7f, hsa-let-7d, hsa-miR-7, RPS6KA3, TSC1 and IGF1 may possess key roles in the development of IAs. The integrated analysis in the present study may provide insights into the understanding of underlying molecular mechanisms of IAs and novel therapeutic targets.
引用
收藏
页码:3239 / 3248
页数:10
相关论文
共 45 条
  • [1] PathwayVoyager: pathway mapping using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database
    Altermann, E
    Klaenhammer, TR
    [J]. BMC GENOMICS, 2005, 6 (1)
  • [2] MicroRNAs: Genomics, biogenesis, mechanism, and function (Reprinted from Cell, vol 116, pg 281-297, 2004)
    Bartel, David P.
    [J]. CELL, 2007, 131 (04) : 11 - 29
  • [3] Unruptured intracranial aneurysms: epidemiology, natural history, management options, and familial screening
    Brown, Robert D., Jr.
    Broderick, Jrioseph P.
    [J]. LANCET NEUROLOGY, 2014, 13 (04) : 393 - 404
  • [4] Unruptured Intracranial Aneurysms
    Brown, Robert D., Jr.
    [J]. SEMINARS IN NEUROLOGY, 2010, 30 (05) : 537 - 544
  • [5] Cigarette Smoke and Inflammation: Role in Cerebral Aneurysm Formation and Rupture
    Chalouhi, Nohra
    Ali, Muhammad S.
    Starke, Robert M.
    Jabbour, Pascal M.
    Tjoumakaris, Stavropoula I.
    Gonzalez, L. Fernando
    Rosenwasser, Robert H.
    Koch, Walter J.
    Dumont, Aaron S.
    [J]. MEDIATORS OF INFLAMMATION, 2012, 2012
  • [6] Pathogenesis of tuberous sclerosis subependymal giant cell astrocytornas:: Biallelic inactivation of TSC1 or TSC2 leads to rnTOR activation
    Chan, JA
    Zhang, HB
    Roberts, PS
    Jozwiak, S
    Wieslawa, G
    Lewin-Kowalik, J
    Kotulska, K
    Kwiatkowski, DJ
    [J]. JOURNAL OF NEUROPATHOLOGY AND EXPERIMENTAL NEUROLOGY, 2004, 63 (12) : 1236 - 1242
  • [7] miRNA microarray reveals specific expression in the peripheral blood of glioblastoma patients
    Dong, Lun
    Li, Yuping
    Han, Chongxu
    Wang, Xiaodong
    She, Lei
    Zhang, Hengzhu
    [J]. INTERNATIONAL JOURNAL OF ONCOLOGY, 2014, 45 (02) : 746 - 756
  • [8] Role of IκB Kinase-β in the Growth-Promoting Effects of Angiotensin II In Vitro and In Vivo
    Doyon, Priscilla
    van Zuylen, Wendy J.
    Servant, Marc J.
    [J]. ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY, 2013, 33 (12) : 2850 - 2857
  • [9] miRWalk - Database: Prediction of possible miRNA binding sites by "walking" the genes of three genomes
    Dweep, Harsh
    Sticht, Carsten
    Pandey, Priyanka
    Gretz, Norbert
    [J]. JOURNAL OF BIOMEDICAL INFORMATICS, 2011, 44 (05) : 839 - 847
  • [10] Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    Edgar, R
    Domrachev, M
    Lash, AE
    [J]. NUCLEIC ACIDS RESEARCH, 2002, 30 (01) : 207 - 210