Droplet-Based Microfluidic Systems for High-Throughput Single DNA Molecule Isothermal Amplification and Analysis

被引:209
|
作者
Mazutis, Linas [1 ]
Araghi, Ali Fallah [1 ]
Miller, Oliver J. [1 ]
Baret, Jean-Christophe [1 ]
Frenz, Lucas [1 ]
Janoshazi, Agnes [1 ,3 ]
Taly, Valerie [1 ]
Miller, Benjamin J. [2 ]
Hutchison, J. Brian [2 ]
Link, Darren [2 ]
Griffiths, Andrew D. [1 ]
Ryckelynck, Michael [1 ]
机构
[1] Univ Strasbourg, CNRS, ISIS, UMR 7006, F-67083 Strasbourg, France
[2] RainDance Technol Inc, Lexington, MA 02421 USA
[3] Univ Strasbourg, IGBMC, CNRS, UMR 7104, F-67404 Illkirch Graffenstaden, France
基金
英国医学研究理事会;
关键词
POLYMERASE-CHAIN-REACTION; PICOLITER DROPLETS; DIGITAL PCR; REAL-TIME; ON-CHIP; POLY(DIMETHYLSILOXANE); GALACTOSIDASE; EMULSIONS; EVOLUTION; PROTEIN;
D O I
10.1021/ac900403z
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
We have developed a method for high-throughput isothermal amplification of single DNA molecules in a droplet-based microfluidic system. DNA amplification in droplets was analyzed using an intercalating fluorochrome, allowing fast and accurate "digital" quantification of the template DNA based on the Poisson distribution of DNA molecules in droplets. The clonal amplified DNA in each 2 pL droplet was further analyzed by measuring the enzymatic activity of the encoded proteins after fusion with a 15 pL droplet containing an in vitro translation system.
引用
收藏
页码:4813 / 4821
页数:9
相关论文
共 50 条
  • [1] Recent advances in high-throughput droplet-based microfluidic screening platforms for food analysis
    Zhang, Qianqian
    Yue, Shiqiang
    Zhang, Dongyuan
    Lu, Fuping
    Mao, Shuhong
    Qin, Hui-Min
    FOOD BIOSCIENCE, 2024, 62
  • [2] Droplet-based microfluidics in drug discovery, transcriptomics and high-throughput molecular genetics
    Shembekar, Nachiket
    Chaipan, Chawaree
    Utharala, Ramesh
    Merten, Christoph A.
    LAB ON A CHIP, 2016, 16 (08) : 1314 - 1331
  • [3] Building droplet-based microfluidic systems for biological analysis
    Niu, Xize
    deMello, Andrew J.
    BIOCHEMICAL SOCIETY TRANSACTIONS, 2012, 40 : 615 - 623
  • [4] Hydrogel Droplet Microfluidics for High-Throughput Single Molecule/Cell Analysis
    Zhu, Zhi
    Yang, Chaoyong James
    ACCOUNTS OF CHEMICAL RESEARCH, 2017, 50 (01) : 22 - 31
  • [5] Droplet-based microfluidic high-throughput screening of heterologous enzymes secreted by the yeast Yarrowia lipolytica
    Beneyton, Thomas
    Thomas, Stephane
    Griffiths, Andrew D.
    Nicaud, Jean-Marc
    Drevelle, Antoine
    Rossignol, Tristan
    MICROBIAL CELL FACTORIES, 2017, 16
  • [6] High-throughput droplet-based microfluidics for directed evolution of enzymes
    Chiu, Flora W. Y.
    Stavrakis, Stavros
    ELECTROPHORESIS, 2019, 40 (21) : 2860 - 2872
  • [7] High-throughput droplet-based analysis of influenza A virus genetic reassortment by single-virus RNA sequencing
    Chen, Kuang-Yu
    Karuppusamy, Jayaprakash
    O'Neill, Mary B.
    Opuu, Vaitea
    Bahin, Mathieu
    Foulon, Sophie
    Ibanez, Pablo
    Quintana-Murci, Lluis
    Ozawa, Tatsuhiko
    Werf, Sylvie van der
    Nghe, Philippe
    Naffakh, Nadia
    Griffiths, Andrew
    Isel, Catherine
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2023, 120 (06)
  • [8] An integrated and multi-functional droplet-based microfluidic platform for digital DNA amplification
    Wang, Yuan
    Zhou, Xiaoyu
    Yang, Zihan
    Xu, Tao
    Fu, Huayang
    Fong, Chi-Chun
    Sun, Jiayu
    Chin, Y. Rebecca
    Zhang, Liang
    Guan, Xinyuan
    Yang, Mengsu
    BIOSENSORS & BIOELECTRONICS, 2024, 246
  • [9] High-throughput single molecule screening of DNA and proteins
    Yeung, ES
    CHEMICAL RECORD, 2001, 1 (02) : 123 - 139
  • [10] Ultrahigh-Throughput Improvement and Discovery of Enzymes Using Droplet-Based Microfluidic Screening
    Autour, Alexis
    Ryckelynck, Michael
    MICROMACHINES, 2017, 8 (04)