Map-based analysis of the tenacious glume gene Tg-B1 of wild emmer and its role in wheat domestication

被引:33
作者
Faris, Justin D. [1 ]
Zhang, Zengcui [1 ]
Chao, Shiaoman [1 ]
机构
[1] USDA ARS, Red River Valley Agr Res Ctr, Cereal Crops Res Unit, Fargo, ND 58102 USA
关键词
Triticum; Durum; Wheat evolution; Free-threshing; FREE-THRESHING HABIT; CHROMOSOME BIN MAP; TRITICUM-SPELTA L; HEXAPLOID WHEAT; MOLECULAR CHARACTERIZATION; MICROSATELLITE MARKERS; TETRAPLOID WHEAT; GENOMIC REGION; BRITTLE RACHIS; LINKAGE MAP;
D O I
10.1016/j.gene.2014.03.034
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The domestication of wheat was instrumental in spawning the civilization of humankind, and it occurred through genetic mutations that gave rise to types with non-fragile rachises, soft glumes, and free-threshing seed. Wild emmer (Triticum turgidum ssp. dicoccoides), the tetraploid AB-genome progenitor of domesticated wheat has genes that confer tenacious glumes (Tg) that underwent genetic mutations to give rise to free-threshing wheat. Here, we evaluated disomic substitution lines involving chromosomes 2A and 2B of wild emmer accessions substituted for homologous chromosomes in tetraploid and hexaploid backgrounds. The results suggested that both chromosomes 2A and 2B of wild emmer possess genes that inhibit threshability. A population of recombinant inbred lines derived from the tetraploid durum wheat variety Langdon crossed with a Langdon T. turgidum ssp. dicoccoides accession P1481521 chromosome 2B disomic substitution line was used to develop a genetic linkage map of 2B, evaluate the genetics of threshability, and map the gene derived from P1481521 that inhibited threshability. A 2BS linkage map comprised of 58 markers was developed, and markers delineated the gene to a 2.3 cM interval. Comparative analysis with maps containing the tenacious glume gene Tg-D1 on chromosome arm 2DS from Aegilops tauschii, the D genome progenitor of hexaploid wheat, revealed that the gene inhibiting threshability in wild emmer was homoeologous to Tg-D1 and therefore designated Tg-B1. Comparative analysis with rice and Brachypodium distachyon indicated a high level of divergence and poorly conserved colinearity, particularly near the Tg-B1 locus. These results provide a foundation for further studies involving Tg-B1, which, together with Tg-D1, had profound influences on wheat domestication. Published by Elsevier B.V.
引用
收藏
页码:198 / 208
页数:11
相关论文
共 69 条
[1]   Marker Development and Saturation Mapping of the Tan Spot Ptr ToxB Sensitivity Locus Tsc2 in Hexaploid Wheat [J].
Abeysekara, Nilwala S. ;
Friesen, Timothy L. ;
Liu, Zhaohui ;
McClean, Phillip E. ;
Faris, Justin D. .
PLANT GENOME, 2010, 3 (03) :179-189
[2]   Wheat Zapper: a flexible online tool for colinearity studies in grass genomes [J].
Alnemer, Loai M. ;
Seetan, Raed I. ;
Bassi, Filippo M. ;
Chitraranjan, Charith ;
Helsene, Adam ;
Loree, Paul ;
Goshn, Steve Bou ;
Gu, Yong Q. ;
Luo, Ming-Cheng ;
Iqbal, M. Javed ;
Lazo, Gerard R. ;
Denton, Anne M. ;
Kianian, Shahryar F. .
FUNCTIONAL & INTEGRATIVE GENOMICS, 2013, 13 (01) :11-17
[3]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[4]   Dispersion and domestication shaped the genome of bread wheat [J].
Berkman, Paul J. ;
Visendi, Paul ;
Lee, Hong C. ;
Stiller, Jiri ;
Manoli, Sahana ;
Lorenc, Michal T. ;
Lai, Kaitao ;
Batley, Jacqueline ;
Fleury, Delphine ;
Simkova, Hana ;
Kubalakova, Marie ;
Song Weining ;
Dolezel, Jaroslav ;
Edwards, David .
PLANT BIOTECHNOLOGY JOURNAL, 2013, 11 (05) :564-571
[5]   Phylogenetic reconstruction based on low copy DNA sequence data in an allopolyploid: The B genome of wheat [J].
Blake, NK ;
Lehfeldt, BR ;
Lavin, M ;
Talbert, LE .
GENOME, 1999, 42 (02) :351-360
[6]   About the origin of European spelt (Triticum spelta L.):: allelic differentiation of the HMW Glutenin B1-1 and A1-2 subunit genes [J].
Blatter, RHE ;
Jacomet, S ;
Schlumbaum, A .
THEORETICAL AND APPLIED GENETICS, 2004, 108 (02) :360-367
[7]   Spelt-specific alleles in HMW glutenin genes from modern and historical European spelt (Triticum spelta L.) [J].
Blatter, RHE ;
Jacomet, S ;
Schlumbaum, A .
THEORETICAL AND APPLIED GENETICS, 2002, 104 (2-3) :329-337
[8]   Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars [J].
Cavanagh, Colin R. ;
Chao, Shiaoman ;
Wang, Shichen ;
Huang, Bevan Emma ;
Stephen, Stuart ;
Kiani, Seifollah ;
Forrest, Kerrie ;
Saintenac, Cyrille ;
Brown-Guedira, Gina L. ;
Akhunova, Alina ;
See, Deven ;
Bai, Guihua ;
Pumphrey, Michael ;
Tomar, Luxmi ;
Wong, Debbie ;
Kong, Stephan ;
Reynolds, Matthew ;
da Silva, Marta Lopez ;
Bockelman, Harold ;
Talbert, Luther ;
Anderson, James A. ;
Dreisigacker, Susanne ;
Baenziger, Stephen ;
Carter, Arron ;
Korzun, Viktor ;
Morrell, Peter Laurent ;
Dubcovsky, Jorge ;
Morell, Matthew K. ;
Sorrells, Mark E. ;
Hayden, Matthew J. ;
Akhunov, Eduard .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (20) :8057-8062
[9]   Acc homoeoloci and the evolution of wheat genomes [J].
Chalupska, D. ;
Lee, H. Y. ;
Faris, J. D. ;
Evrard, A. ;
Chalhoub, B. ;
Haselkorn, R. ;
Gornicki, P. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (28) :9691-9696
[10]   The control of maize spikelet meristem fate by the APETALA2-like gene indeterminate spikelet1 [J].
Chuck, G ;
Meeley, RB ;
Hake, S .
GENES & DEVELOPMENT, 1998, 12 (08) :1145-1154