The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis

被引：19

作者：

Xia, Qiuju ^{[1
,2
,10
]}

Pan, Lei ^{[3
]}

Zhang, Ru ^{[4
]}

Ni, Xuemei ^{[2
,10
]}

Wang, Yangzi ^{[2
,10
]}

Dong, Xiao ^{[2
,10
]}

Gao, Yun ^{[5
]}

Zhang, Zhe ^{[2
,10
]}

Kui, Ling ^{[6
]}

Li, Yong ^{[2
,10
]}

Wang, Wen ^{[4
,6
]}

Yang, Huanming ^{[1
,7
]}

Chen, Chanyou ^{[3
]}

Miao, Jianhua ^{[8
]}

Chen, Wei ^{[5
,7
,9
]}

Dong, Yang ^{[5
,7
,9
]}

机构：

[1] Univ Chinese Acad Sci, BGI Educ Ctr, Shenzhen 518083, Peoples R China

[2] BGI Shenzhen, BGI Inst Appl Agr, Shenzhen 518120, Peoples R China

[3] Jianghan Univ, Coll Life Sci, Hubei Prov Engn Res Ctr Legume Plants, Wuhan 430056, Hubei, Peoples R China

[4] Northwestern Polytech Univ, Key Lab Space Biosci & Biotechnol, Ctr Ecol & Environm Sci, Xian 710072, Shaanxi, Peoples R China

[5] Yunnan Agr Univ, Coll Biol Big Data, Kunming 650201, Yunnan, Peoples R China

[6] Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Kunming 650223, Yunnan, Peoples R China

[7] BGI Shenzhen, Shenzhen 518083, Peoples R China

[8] Guangxi Bot Garden Med Plants, Guangxi Key Lab Med Resources Prod & Genet Improv, Nanning 530023, Guangxi, Peoples R China

[9] Natl & Local Joint Engn Res Ctr Germplasm Utiliza, Kunming 650201, Yunnan, Peoples R China

[10] BGI Shenzhen, Minist Agr, Key Lab Genom, Shenzhen 518083, Peoples R China

来源：

SCIENTIFIC DATA | 2019年 / 6卷 / 1期

基金：

中国国家自然科学基金;

关键词：

SUPPLEMENT TREMBL; LINKAGE MAP; L; WALP; COWPEA; ALIGNMENT; SEQUENCE; AFLP;

D O I：

10.1038/s41597-019-0130-6

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Asparagus bean (Vigna. unguiculata ssp. sesquipedialis), known for its very long and tender green pods, is an important vegetable crop broadly grown in the developing Asian countries. In this study, we reported a 632.8 Mb assembly (549.81 Mb non-N size) of asparagus bean based on the whole genome shotgun sequencing strategy. We also generated a linkage map for asparagus bean, which helped anchor 94.42% of the scaffolds into 11 pseudo-chromosomes. A total of 42,609 protein-coding genes and 3,579 non-protein-coding genes were predicted from the assembly. Taken together, these genomic resources of asparagus bean will help develop a pan-genome of V. unguiculata and facilitate the investigation of economically valuable traits in this species, so that the cultivation of this plant would help combat the protein and energy malnutrition in the developing world.

引用

页数：10

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