The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis

被引：19

作者：

Xia, Qiuju ^{[1
,2
,10
]}

Pan, Lei ^{[3
]}

Zhang, Ru ^{[4
]}

Ni, Xuemei ^{[2
,10
]}

Wang, Yangzi ^{[2
,10
]}

Dong, Xiao ^{[2
,10
]}

Gao, Yun ^{[5
]}

Zhang, Zhe ^{[2
,10
]}

Kui, Ling ^{[6
]}

Li, Yong ^{[2
,10
]}

Wang, Wen ^{[4
,6
]}

Yang, Huanming ^{[1
,7
]}

Chen, Chanyou ^{[3
]}

Miao, Jianhua ^{[8
]}

Chen, Wei ^{[5
,7
,9
]}

Dong, Yang ^{[5
,7
,9
]}

机构：

[1] Univ Chinese Acad Sci, BGI Educ Ctr, Shenzhen 518083, Peoples R China

[2] BGI Shenzhen, BGI Inst Appl Agr, Shenzhen 518120, Peoples R China

[3] Jianghan Univ, Coll Life Sci, Hubei Prov Engn Res Ctr Legume Plants, Wuhan 430056, Hubei, Peoples R China

[4] Northwestern Polytech Univ, Key Lab Space Biosci & Biotechnol, Ctr Ecol & Environm Sci, Xian 710072, Shaanxi, Peoples R China

[5] Yunnan Agr Univ, Coll Biol Big Data, Kunming 650201, Yunnan, Peoples R China

[6] Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Kunming 650223, Yunnan, Peoples R China

[7] BGI Shenzhen, Shenzhen 518083, Peoples R China

[8] Guangxi Bot Garden Med Plants, Guangxi Key Lab Med Resources Prod & Genet Improv, Nanning 530023, Guangxi, Peoples R China

[9] Natl & Local Joint Engn Res Ctr Germplasm Utiliza, Kunming 650201, Yunnan, Peoples R China

[10] BGI Shenzhen, Minist Agr, Key Lab Genom, Shenzhen 518083, Peoples R China

来源：

SCIENTIFIC DATA | 2019年 / 6卷 / 1期

基金：

中国国家自然科学基金;

关键词：

SUPPLEMENT TREMBL; LINKAGE MAP; L; WALP; COWPEA; ALIGNMENT; SEQUENCE; AFLP;

D O I：

10.1038/s41597-019-0130-6

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Asparagus bean (Vigna. unguiculata ssp. sesquipedialis), known for its very long and tender green pods, is an important vegetable crop broadly grown in the developing Asian countries. In this study, we reported a 632.8 Mb assembly (549.81 Mb non-N size) of asparagus bean based on the whole genome shotgun sequencing strategy. We also generated a linkage map for asparagus bean, which helped anchor 94.42% of the scaffolds into 11 pseudo-chromosomes. A total of 42,609 protein-coding genes and 3,579 non-protein-coding genes were predicted from the assembly. Taken together, these genomic resources of asparagus bean will help develop a pan-genome of V. unguiculata and facilitate the investigation of economically valuable traits in this species, so that the cultivation of this plant would help combat the protein and energy malnutrition in the developing world.

引用

页数：10

共 50 条

[1] The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis
Qiuju Xia
Lei Pan
Ru Zhang
Xuemei Ni
Yangzi Wang
Xiao Dong
Yun Gao
Zhe Zhang
Ling Kui
Yong Li
Wen Wang
Huanming Yang
Chanyou Chen
Jianhua Miao
Wei Chen
Yang Dong
Scientific Data, 6
[2] Genome and pan-genome assembly of asparagus bean (Vigna unguiculata ssp. sesquipedialis) reveal the genetic basis of cold adaptation
Liang, Le
Zhang, Jianwei
Xiao, Jiachang
Li, Xiaomei
Xie, Yongdong
Tan, Huaqiang
Song, Xueping
Zhu, Li
Xue, Xinru
Xu, Linyu
Zhou, Peihan
Ran, Jianzhao
Sun, Bo
Huang, Zhi
Tang, Yi
Lin, Lijin
Sun, Guochao
Lai, Yunsun
Li, Huanxiu
FRONTIERS IN PLANT SCIENCE, 2022, 13
[3] Development and polymorphism of Vigna unguiculata ssp. unguiculata microsatellite markers used for phylogenetic analysis in asparagus bean (Vigna unguiculata ssp. sesquipedialis (L.) Verdc.)
Pei Xu
Xiaohua Wu
Baogen Wang
Yonghua Liu
Dehui Qin
Jeffery D. Ehlers
Timothy J. Close
Tingting Hu
Zhongfu Lu
Guojing Li
Molecular Breeding, 2010, 25 : 675 - 684
[4] Genome wide linkage disequilibrium in Chinese asparagus bean (Vigna. unguiculata ssp. sesquipedialis) germplasm: implications for domestication history and genome wide association studies
P Xu
X Wu
B Wang
J Luo
Y Liu
J D Ehlers
T J Close
P A Roberts
Z Lu
S Wang
G Li
Heredity, 2012, 109 : 34 - 40
[5] Genome wide linkage disequilibrium in Chinese asparagus bean (Vigna. unguiculata ssp. sesquipedialis) germplasm: implications for domestication history and genome wide association studies
Xu, P.
Wu, X.
Wang, B.
Luo, J.
Liu, Y.
Ehlers, J. D.
Close, T. J.
Roberts, P. A.
Lu, Z.
Wang, S.
Li, G.
HEREDITY, 2012, 109 (01) : 34 - 40
[6] Development and polymorphism of Vigna unguiculata ssp unguiculata microsatellite markers used for phylogenetic analysis in asparagus bean (Vigna unguiculata ssp sesquipedialis (L.) Verdc.)
Xu, Pei
Wu, Xiaohua
Wang, Baogen
Liu, Yonghua
Qin, Dehui
Ehlers, Jeffery D.
Close, Timothy J.
Hu, Tingting
Lu, Zhongfu
Li, Guojing
MOLECULAR BREEDING, 2010, 25 (04) : 675 - 684
[7] Comparative phylogenetic analysis of the mediator complex subunit in asparagus bean (Vigna unguiculata ssp. sesquipedialis) and its expression profile under cold stress
Le Liang
Dong Wang
Dongmei Xu
Jiachang Xiao
Wen Tang
Xueping Song
Guofeng Yu
Zongxu Liang
Minghui Xie
Zeping Xu
Bo Sun
Yi Tang
Zhi Huang
Yunsong Lai
Huanxiu Li
BMC Genomics, 25
[8] Comparative phylogenetic analysis of the mediator complex subunit in asparagus bean (Vigna unguiculata ssp. sesquipedialis) and its expression profile under cold stress
Liang, Le
Wang, Dong
Xu, Dongmei
Xiao, Jiachang
Tang, Wen
Song, Xueping
Yu, Guofeng
Liang, Zongxu
Xie, Minghui
Xu, Zeping
Sun, Bo
Tang, Yi
Huang, Zhi
Lai, Yunsong
Li, Huanxiu
BMC GENOMICS, 2024, 25 (01)
[9] A SNP and SSR Based Genetic Map of Asparagus Bean (Vigna. unguiculata ssp sesquipedialis) and Comparison with the Broader Species
Xu, Pei
Wu, Xiaohua
Wang, Baogen
Liu, Yonghua
Ehlers, Jeffery D.
Close, Timothy J.
Roberts, Philip A.
Diop, Ndeye-Ndack
Qin, Dehui
Hu, Tingting
Lu, Zhongfu
Li, Guojing
PLOS ONE, 2011, 6 (01):
[10] Transcriptomic profiling and analysis of differentially expressed genes in asparagus bean (Vigna unguiculata ssp. sesquipedalis) under salt stress
Pan, Lei
Yu, Xiaolu
Shao, Jingjie
Liu, Zhichao
Gao, Tong
Zheng, Yu
Zeng, Chen
Liang, Chengzhi
Chen, Chanyou
PLOS ONE, 2019, 14 (07):

← 1 2 3 4 5 →