Torque and buckling in stretched intertwined double-helix DNAs

被引:11
作者
Brahmachari, Sumitabha [1 ]
Marko, John F. [1 ,2 ]
机构
[1] Northwestern Univ, Dept Phys & Astron, Evanston, IL 60208 USA
[2] Northwestern Univ, Dept Mol Biosci, Evanston, IL 60208 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
COLI TOPOISOMERASE-IV; SERINE RECOMBINASE; ESCHERICHIA-COLI; SINGLE-MOLECULE; CHIRAL DISCRIMINATION; ENTROPIC ELASTICITY; II TOPOISOMERASES; STRAND EXCHANGE; DOUBLE-LAYER; MECHANISM;
D O I
10.1103/PhysRevE.95.052401
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
We present a statistical-mechanical model for the behavior of intertwined DNAs, with a focus on their torque and extension as a function of their catenation (linking) number and applied force, as studied in magnetic tweezers experiments. Our model produces results in good agreement with available experimental data and predicts a catenation-dependent effective twist modulus distinct from what is observed for twisted individual double-helix DNAs. We find that buckling occurs near the point where experiments have observed a kink in the extension versus linking number, and that the subsequent "supercoiled braid" state corresponds to a proliferation of multiple small plectoneme structures. We predict a discontinuity in extension at the buckling transition corresponding to nucleation of the first plectoneme domain. We also find that buckling occurs for lower linking number at lower salt; the opposite trend is observed for supercoiled single DNAs.
引用
收藏
页数:16
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