Stem-loop oligonucleotides: a robust tool for molecular biology and biotechnology

被引:125
作者
Broude, NE [1 ]
机构
[1] Boston Univ, Ctr Adv Biotechnol, Boston, MA 02215 USA
[2] Boston Univ, Dept Biomed Engn, Boston, MA 02215 USA
关键词
D O I
10.1016/S0167-7799(02)01942-X
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The specific structural features of stem-loop (hairpin) DNA constructs provide increased specificity of target recognition. Recently, several robust assays have been developed that exploit the potential of structurally constrained oligonucleotides to hybridize with their cognate targets. Here, I review new diagnostic approaches based on the formation of stem-loop DNA oligonucleotides: molecular beacon methodology, suppression PCR approaches and the use of hairpin probes in DNA microarrays. The advantages of these techniques over existing ones for sequence-specific DNA detection, amplification and manipulation are discussed.
引用
收藏
页码:249 / 256
页数:8
相关论文
共 77 条
[1]   A molecular beacon strategy for the thermodynamic characterization of triplex DNA: Triplex formation at the promoter region of cyclin D1 [J].
Antony, T ;
Thomas, T ;
Sigal, LH ;
Shirahata, A ;
Thomas, TJ .
BIOCHEMISTRY, 2001, 40 (31) :9387-9395
[2]   Effects of DNA sequence and structure on binding of RecA to single-stranded DNA [J].
Bar-Ziv, R ;
Libchaber, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (16) :9068-9073
[3]   A continuous assay for DNA cleavage: The application of "break lights" to enediynes, iron-dependent agents, and nucleases [J].
Biggins, JB ;
Prudent, JR ;
Marshall, DJ ;
Ruppen, M ;
Thorson, JS .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (25) :13537-13542
[4]   Total synthesis of distamycin A and 2640 analogues: A solution-phase combinatorial approach to the discovery of new, bioactive DNA binding agents and development of a rapid, high-throughput screen for determining relative DNA binding affinity or DNA binding sequence selectivity [J].
Boger, DL ;
Fink, BE ;
Hedrick, MP .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (27) :6382-6394
[5]   A simple, high-resolution method for establishing DNA binding affinity and sequence selectivity [J].
Boger, DL ;
Fink, BE ;
Brunette, SR ;
Tse, WC ;
Hedrick, MP .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (25) :5878-5891
[6]   Kinetics of conformational fluctuations in DNA hairpin-loops [J].
Bonnet, G ;
Krichevsky, O ;
Libchaber, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (15) :8602-8606
[7]   Thermodynamic basis of the enhanced specificity of structured DNA probes [J].
Bonnet, G ;
Tyagi, S ;
Libchaber, A ;
Kramer, FR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (11) :6171-6176
[8]   High-level multiplex DNA amplification [J].
Broude, NE ;
Driscoll, K ;
Cantor, CR .
ANTISENSE & NUCLEIC ACID DRUG DEVELOPMENT, 2001, 11 (05) :327-332
[9]   PCR based targeted genomic and cDNA differential display [J].
Broude, NE ;
Storm, N ;
Malpel, S ;
Graber, JH ;
Lukyanov, S ;
Sverdlov, E ;
Smith, CL .
GENETIC ANALYSIS-BIOMOLECULAR ENGINEERING, 1999, 15 (02) :51-63
[10]   Multiplex allele-specific target amplification based on PCR suppression [J].
Broude, NE ;
Zhang, LG ;
Woodward, K ;
Englert, D ;
Cantor, CR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (01) :206-211