The long non-coding RNA LUCAT1 is a negative feedback regulator of interferon responses in humans

被引:56
作者
Agarwal, Shiuli [1 ]
Vierbuchen, Tim [1 ]
Ghosh, Sreya [1 ]
Chan, Jennie [1 ]
Jiang, Zhaozhao [1 ]
Kandasamy, Richard K. [2 ]
Ricci, Emiliano [3 ]
Fitzgerald, Katherine A. [1 ]
机构
[1] Univ Massachusetts, Sch Med, Program Innate Immun, Worcester, MA 01605 USA
[2] Norwegian Univ Sci & Technol, Dept Clin & Mol Med IKOM, Ctr Mol Inflammat Res CEMIR, N-7491 Trondheim, Norway
[3] Univ Lyon, ENSL, UCBL, CNRS,INSERM,LBMC, 46 Allee Italie, F-69007 Lyon, France
关键词
SIGNALING SOCS 1; TRANSCRIPTIONAL ACTIVATION; CANCER; SUPPRESSOR; MICRORNAS; EVOLUTION; LINES;
D O I
10.1038/s41467-020-20165-5
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Long non-coding RNAs are important regulators of biological processes including immune responses. The immunoregulatory functions of lncRNAs have been revealed primarily in murine models with limited understanding of lncRNAs in human immune responses. Here, we identify lncRNA LUCAT1 which is upregulated in human myeloid cells stimulated with lipopolysaccharide and other innate immune stimuli. Targeted deletion of LUCAT1 in myeloid cells increases expression of type I interferon stimulated genes in response to LPS. By contrast, increased LUCAT1 expression results in a reduction of the inducible ISG response. In activated cells, LUCAT1 is enriched in the nucleus where it associates with chromatin. Further, LUCAT1 limits transcription of interferon stimulated genes by interacting with STAT1 in the nucleus. Together, our study highlights the role of the lncRNA LUCAT1 as a post-induction feedback regulator which functions to restrain the immune response in human cells. lncRNAs are transcriptional regulators, but little is known of them functioning as negative feedback regulators of inflammation in humans. Here, the authors show that the human lncRNA LUCAT1 sequesters STAT1 to limit JAK/STAT signaling and the inflammatory response to viral infection or TLR stimulation in myeloid cells.
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页数:11
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共 58 条
  • [1] Differentiation of mammary tumors and reduction in metastasis upon Malat1 lncRNA loss
    Arun, Gayatri
    Diermeier, Sarah
    Akerman, Martin
    Chang, Kung-Chi
    Wilkinson, J. Erby
    Hearn, Stephen
    Kim, Youngsoo
    MacLeod, A. Robert
    Krainer, Adrian R.
    Norton, Larry
    Brogi, Edi
    Egeblad, Mikala
    Spector, David L.
    [J]. GENES & DEVELOPMENT, 2016, 30 (01) : 34 - 51
  • [2] Immunobiology of Long Noncoding RNAs
    Atianand, Maninjay K.
    Caffrey, Daniel R.
    Fitzgerald, Katherine A.
    [J]. ANNUAL REVIEW OF IMMUNOLOGY, VOL 35, 2017, 35 : 177 - 198
  • [3] A Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation
    Atianand, Maninjay K.
    Hu, Wenqian
    Satpathy, Ansuman T.
    Shen, Ying
    Ricci, Emiliano P.
    Alvarez-Dominguez, Juan R.
    Bhatta, Ankit
    Schattgen, Stefan A.
    McGowan, Jason D.
    Blin, Juliana
    Braun, Joerg E.
    Gandhi, Pallavi
    Moore, Melissa J.
    Chang, Howard Y.
    Lodish, Harvey F.
    Caffrey, Daniel R.
    Fitzgerald, Katherine A.
    [J]. CELL, 2016, 165 (07) : 1672 - 1685
  • [4] Global Positioning System: Understanding Long Noncoding RNAs through Subcellular Localization
    Carlevaro-Fita, Joana
    Johnson, Rory
    [J]. MOLECULAR CELL, 2019, 73 (05) : 869 - 883
  • [5] A Long Noncoding RNA Mediates Both Activation and Repression of Immune Response Genes
    Carpenter, Susan
    Aiello, Daniel
    Atianand, Maninjay K.
    Ricci, Emiliano P.
    Gandhi, Pallavi
    Hall, Lisa L.
    Byron, Meg
    Monks, Brian
    Henry-Bezy, Meabh
    Lawrence, Jeanne B.
    O'Neill, Luke A. J.
    Moore, Melissa J.
    Caffrey, Daniel R.
    Fitzgerald, Katherine A.
    [J]. SCIENCE, 2013, 341 (6147) : 789 - 792
  • [6] A long noncoding RNA associated with susceptibility to celiac disease
    Castellanos-Rubio, Ainara
    Fernandez-Jimenez, Nora
    Kratchmarov, Radomir
    Luo, Xiaobing
    Bhagat, Govind
    Green, Peter H. R.
    Schneider, Robert
    Kiledjian, Megerditch
    Bilbao, Jose Ramon
    Ghosh, Sankar
    [J]. SCIENCE, 2016, 352 (6281) : 91 - 95
  • [7] Chu C, 2018, METHODS MOL BIOL, V1861, P37, DOI 10.1007/978-1-4939-8766-5_3
  • [8] JAK-STAT PATHWAYS AND TRANSCRIPTIONAL ACTIVATION IN RESPONSE TO IFNS AND OTHER EXTRACELLULAR SIGNALING PROTEINS
    DARNELL, JE
    KERR, IM
    STARK, GR
    [J]. SCIENCE, 1994, 264 (5164) : 1415 - 1421
  • [9] The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
    Derrien, Thomas
    Johnson, Rory
    Bussotti, Giovanni
    Tanzer, Andrea
    Djebali, Sarah
    Tilgner, Hagen
    Guernec, Gregory
    Martin, David
    Merkel, Angelika
    Knowles, David G.
    Lagarde, Julien
    Veeravalli, Lavanya
    Ruan, Xiaoan
    Ruan, Yijun
    Lassmann, Timo
    Carninci, Piero
    Brown, James B.
    Lipovich, Leonard
    Gonzalez, Jose M.
    Thomas, Mark
    Davis, Carrie A.
    Shiekhattar, Ramin
    Gingeras, Thomas R.
    Hubbard, Tim J.
    Notredame, Cedric
    Harrow, Jennifer
    Guigo, Roderic
    [J]. GENOME RESEARCH, 2012, 22 (09) : 1775 - 1789
  • [10] Non-coding RNAs in human disease
    Esteller, Manel
    [J]. NATURE REVIEWS GENETICS, 2011, 12 (12) : 861 - 874