Identification of Novel MicroRNAs and Their Diagnostic and Prognostic Significance in Oral Cancer

被引:88
作者
Falzone, Luca [1 ]
Lupo, Gabriella [1 ,2 ]
La Rosa, Giusy Rita Maria [3 ]
Crimi, Salvatore [4 ]
Anfuso, Carmelina Daniela [1 ,2 ]
Salemi, Rossella [1 ]
Rapisarda, Ernesto [3 ]
Libra, Massimo [1 ,2 ]
Candido, Saverio [1 ,2 ]
机构
[1] Univ Catania, Dept Biomed & Biotechnol Sci, Oncol, Clin & Gen Pathol Sect, I-95123 Catania, Italy
[2] Univ Catania, Res Ctr Prevent Diag & Treatment Canc, I-95123 Catania, Italy
[3] Univ Catania, Dept Gen Surg & Surg Med Specialties, I-95125 Catania, Italy
[4] Univ Catania, Dept Surg & Biomed Sci, I-95123 Catania, Italy
关键词
oral cancer; miRNA; bioinformatics; datasets; biomarkers; TCGA; GEO DataSets; SQUAMOUS-CELL CARCINOMA; INTEGRATED ANALYSIS; EXPRESSION; MALIGNANCY; BIOMARKERS; DATABASE; MARKER; MMP-9; GENE;
D O I
10.3390/cancers11050610
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Background: Oral cancer is one of the most prevalent cancers worldwide. Despite that the oral cavity is easily accessible for clinical examinations, oral cancers are often not promptly diagnosed. Furthermore, to date no effective biomarkers are available for oral cancer. Therefore, there is an urgent need to identify novel biomarkers able to improve both diagnostic and prognostic strategies. In this context, the development of innovative high-throughput technologies for molecular and epigenetics analyses has generated a huge amount of data that may be used for the identification of new cancer biomarkers. Methods: In the present study, GEO DataSets and TCGA miRNA profiling datasets were analyzed in order to identify miRNAs with diagnostic and prognostic significance. Furthermore, several computational approaches were adopted to establish the functional roles of these miRNAs. Results: The analysis of datasets allowed for the identification of 11 miRNAs with a potential diagnostic role for oral cancer. Additionally, eight miRNAs associated with patients' prognosis were also identified; six miRNAs predictive of patients' overall survival (OS) and one, hsa-miR-let.7i-3p, associated with tumor recurrence. Conclusions: The integrated analysis of different miRNA expression datasets allows for the identification of a set of miRNAs that, after validation, may be used for the early detection of oral cancers.
引用
收藏
页数:25
相关论文
共 75 条
[1]   MiRCancerdb: A database for correlation analysis between microRNA and gene expression in cancer [J].
Ahmed M. ;
Nguyen H. ;
Lai T. ;
Kim D.R. .
BMC Research Notes, 11 (1)
[2]   Delayed diagnosis of oral squamous cell carcinoma: A case series [J].
Akbulut N. ;
Oztas B. ;
Kursun S. ;
Evirgen S. .
Journal of Medical Case Reports, 5 (1)
[3]   OncoLnc: linking TCGA survival data to mRNAs, miRNAs, and lncRNAs [J].
Anaya, Jordan .
PEERJ COMPUTER SCIENCE, 2016, 2016 (06)
[4]  
[Anonymous], 2010, J ORAL MICROBIOL, DOI DOI 10.3402/JOM.V2I0.5780
[5]   Lactobacillus rhamnosus GG: An Overview to Explore the Rationale of Its Use in Cancer [J].
Banna, Giuseppe L. ;
Torino, Francesco ;
Marletta, Francesco ;
Santagati, Maria ;
Salemi, Rossella ;
Cannarozzo, Elisa ;
Falzone, Luca ;
Ferrau, Francesco ;
Libra, Massimo .
FRONTIERS IN PHARMACOLOGY, 2017, 8
[6]   NCBI GEO: archive for functional genomics data sets-update [J].
Barrett, Tanya ;
Wilhite, Stephen E. ;
Ledoux, Pierre ;
Evangelista, Carlos ;
Kim, Irene F. ;
Tomashevsky, Maxim ;
Marshall, Kimberly A. ;
Phillippy, Katherine H. ;
Sherman, Patti M. ;
Holko, Michelle ;
Yefanov, Andrey ;
Lee, Hyeseung ;
Zhang, Naigong ;
Robertson, Cynthia L. ;
Serova, Nadezhda ;
Davis, Sean ;
Soboleva, Alexandra .
NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D991-D995
[7]   Identification of extracellular vesicles and characterization of miRNA expression profiles in human blastocoel fluid [J].
Battaglia, R. ;
Palini, S. ;
Vento, M. E. ;
La Ferlita, A. ;
Lo Faro, M. J. ;
Caroppo, E. ;
Borzi, P. ;
Falzone, L. ;
Barbagallo, D. ;
Ragusa, M. ;
Scalia, M. ;
D'Amato, G. ;
Scollo, P. ;
Musumeci, P. ;
Purrello, M. ;
Gravotta, E. ;
Di Pietro, C. .
SCIENTIFIC REPORTS, 2019, 9 (1)
[8]   Molecular Classification of Oral Squamous Cell Carcinoma [J].
Bavle, Radhika Manoj ;
Venugopal, Reshma ;
Konda, Paremala ;
Muniswamappa, Sudhakara ;
Makarla, Soumya .
JOURNAL OF CLINICAL AND DIAGNOSTIC RESEARCH, 2016, 10 (09) :ZE18-ZE21
[9]   The PI3K/Akt/mTOR axis in head and neck cancer: functions, aberrations, cross-talk, and therapies [J].
Broek, R. Vander ;
Mohan, S. ;
Eytan, D. F. ;
Chen, Z. ;
Van Waes, C. .
ORAL DISEASES, 2015, 21 (07) :815-825
[10]   Transcriptome Profiling in Human Diseases: New Advances and Perspectives [J].
Casamassimi, Amelia ;
Federico, Antonio ;
Rienzo, Monica ;
Esposito, Sabrina ;
Ciccodicola, Alfredo .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2017, 18 (08)