Logging residues, such as tops and branches, can provide a useful biofuel for large-scale energy production. However, increasing the harvest intensity may affect the soil nutrient stores and water quality. Here, effects on soil-water chemistry after stem-only and whole-tree harvesting were investigated using data from five experimental sites in Sweden, representing medium-to high-fertility sites. They were located in recharge areas on mineral soil and harvested between the years 1995 and 2001. Soil-water samples had previously been collected from below the main part of the root zone in study plots subjected to stem-only or whole-tree harvest. Soil-water chemistry data from the five sites were jointly analyzed by ANOVA using seasonal mean concentrations from the first six seasons after clear-cutting. The concentrations of NO3--N, K+, and Mg2+ were significantly different (p < 0.05) between the two harvest regimes, indicating lower levels after whole-tree harvest than after stem-only harvest. No significant differences were detected for electrical conductivity, pH, or the concentrations of NH4+-N, Al, Ca2+, SO42--S, and Cl-. Measurements at one site suggested that the logging residues left on the ground increased the influx of Cl-to the soil. Simple budget calculations indicated that the nutrient export by logging-residue harvest was greater than the export by leaching during the regeneration phase.