Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut

被引:20
作者
Lagier, Jean-Christophe [1 ]
Khelaifia, Saber [1 ]
Azhar, Esam Ibraheem [2 ,3 ]
Croce, Olivier [1 ]
Bibi, Fehmida [2 ]
Jiman-Fatani, Asif Ahmad [4 ]
Yasir, Muhammad [2 ]
Ben Helaby, Huda [2 ]
Robert, Catherine [1 ]
Fournier, Pierre-Edouard [1 ]
Raoult, Didier [1 ,2 ]
机构
[1] Aix Marseille Univ, Unite Rech Malad Infect & Trop Emergentes, Inst Hosp Univ Mediterranee Infect,Inserm 1095, CNRS 7278,UM 63,Inst Rech Dev 198,Fac Med, F-13385 Marseille 5, France
[2] King Abdulaziz Univ, Special Infect Agents Unit, King Fahd Med Res Ctr, Jeddah 21413, Saudi Arabia
[3] King Abdulaziz Univ, Dept Med Lab Technol, Fac Appl Med Sci, Jeddah 21413, Saudi Arabia
[4] King Abdulaziz Univ, Fac Med, Dept Med Microbiol & Parasitol, Jeddah 21413, Saudi Arabia
关键词
Oceanobacillus picturae; Genome; Halophilic bacteria; Human gut; Culturomics; SP-NOV; EMENDED DESCRIPTION; VIRGIBACILLUS-PICTURAE; COMB; NOV; HALOTOLERANT; ONCORHYNCHI; ALKALIPHILE; CULTUROMICS; SYSTEM; TOOL;
D O I
10.1186/s40793-015-0081-2
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Oceanobacillus picturae is a strain of a moderately halophilic bacterium, first isolated from a mural painting. We demonstrate, for the first time, the culture of human Oceanobacillus picturae, strain S1(T), whose genome is described here, from a stool sample collected from a 25-year-old Saoudian healthy individual. We used a slightly modified standard culture medium adding 100 g/L of NaCl. We provide a short description of this strain including its MALDI-TOF spectrum, the main identification tool currently used in clinical microbiology. The 3,675,175 bp long genome exhibits a G + C content of 39.15 % and contains 3666 protein-coding and 157 RNA genes. The draft genome sequence of Oceanobacillus picturae has a similar size to the Oceanobacillus kimchii (respectively 3.67 Mb versus 3.83 Mb). The G + C content was higher compared with Oceanobacillus kimchii (respectively 39.15 % and 35.2 %). Oceanobacillus picturae shared almost identical number of genes (3823 genes versus 3879 genes), with a similar ratio of genes per Mb (1041 genes/Mb versus 1012 genes/Mb). The genome sequencing of Oceanobacillus picturae strain S1 isolated for the first time in a human, will be added to the 778 genome projects from the gastrointestinal tract listed by the international consortium Human Microbiome Project.
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页数:9
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