Next-generation sequencing yields the complete mitogenome of Caridina multidentata and phylogenetic analysis

被引：5

作者：

Wang, Zhengfei ^{[1
]}

Wu, Qiong ^{[1
]}

Guo, Huayun ^{[1
]}

Tang, Dan ^{[1
]}

Bai, Yuze ^{[1
]}

Wang, Ziqian ^{[1
]}

Tao, Yitao ^{[1
]}

机构：

[1] Yancheng Teachers Univ, Jiangsu Synthet Innovat Ctr Coastal Bioagr, Jiangsu Prov Key Lab Coastal Wetland Bioresources, Jiangsu Key Lab Bioresources Saline Soils,Sch Oce, Yancheng, Jiangsu, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2018年 / 3卷 / 01期

基金：

中国国家自然科学基金;

关键词：

Mitogenome; phylogentic; caridea; atyidae; Caridina multidentata; EVOLUTION; GENES;

D O I：

10.1080/23802359.2017.1422403

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

In this study, the complete mitochondrial genome (mitogenome) of Caridina multidentata is reported for the first time. These data demonstrate that the C. multidentata mitochondrial genome is a 15,825 bp circular molecule and encodes the typical 37 metazoan mitochondrial genes [13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs)] and an A + T-rich control region. The genome composition was highly A + T biased 63.45% and showed negative AT-skew (-0.131) and slightly possitive GC-skew (0.018). The complete mitogenome provides essential and important DNA molecular data for further phylogenetic and evolutionary analysis for shrimps.

引用

页码：68 / 70

页数：3

共 8 条

[1]

Burkenroad M. D., 1963, Tulane Studies in Geology, V2, P1

[2] NOVOPlasty: de novo assembly of organelle genomes from whole genome data [J].

Dierckxsens, Nicolas ;

Mardulyn, Patrick ;

Smits, Guillaume .

NUCLEIC ACIDS RESEARCH, 2017, 45 (04)

[3] Genomic Sequence and Experimental Tractability of a New Decapod Shrimp Model, Neocaridina denticulata [J].

Kenny, Nathan J. ;

Sin, Yung Wa ;

Shen, Xin ;

Zhe, Qu ;

Wang, Wei ;

Chan, Ting Fung ;

Tobe, Stephen S. ;

Shimeld, Sebastian M. ;

Chu, Ka Hou ;

Hui, Jerome H. L. .

MARINE DRUGS, 2014, 12 (03) :1419-1437

[4] Early embryonic development of the freshwater shrimp Caridina multidentata (Crustacea, Decapoda, Atyidae) [J].

Klann, Marleen ;

Scholtz, Gerhard .

ZOOMORPHOLOGY, 2014, 133 (03) :295-306

[5] Mitogenomic analysis of decapod crustacean phylogeny corroborates traditional views on their relationships [J].

Shen, Hong ;

Braband, Anke ;

Scholtz, Gerhard .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 66 (03) :776-789

[6] Digging deeper: new gene order rearrangements and distinct patterns of codons usage in mitochondrial genomes among shrimps from the Axiidea, Gebiidea and Caridea (Crustacea: Decapoda) [J].

Tan, Mun Hua ;

Gan, Han Ming ;

Lee, Yin Peng ;

Poore, Gary C. B. ;

Austin, Christopher M. .

PEERJ, 2017, 5

[7] Phylogeny of Decapoda using two nuclear protein-coding genes: Origin and evolution of the Reptantia [J].

Tsang, L. M. ;

Ma, K. Y. ;

Ahyong, S. T. ;

Chan, T. -Y. ;

Chu, K. H. .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 2008, 48 (01) :359-368

[8] Evolution of mitochondrial energy metabolism genes associated with hydrothermal vent adaption of Alvinocaridid shrimps [J].

Wang, Zhengfei ;

Shi, Xuejia ;

Sun, Linxia ;

Bai, Yuze ;

Zhang, Daizhen ;

Tang, Boping .

GENES & GENOMICS, 2017, 39 (12) :1367-1376

← 1 →