Genome heterogeneity drives the evolution of species

被引:7
|
作者
Miotto, Mattia [1 ,2 ]
Monacelli, Lorenzo [1 ]
机构
[1] Sapienza Univ Rome, Dept Phys, Rome, Italy
[2] Ist Italiano Tecnol, Ctr Life Nanosci, Rome, Italy
来源
PHYSICAL REVIEW RESEARCH | 2020年 / 2卷 / 04期
关键词
PHENOTYPIC DIVERSITY; SPECIATION; MUTATION; MODEL; EXTINCTION; EXPRESSION; ECOLOGY; PHYSICS; DNA;
D O I
10.1103/PhysRevResearch.2.043026
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Most of the DNA that composes a complex organism is noncoding and defined as junk. Even the coding part is composed of genes that affect the phenotype differently. Therefore a random mutation has an effect on the specimen fitness that strongly depends on the DNA region where it occurs. Understanding how this heterogeneous composition influences the fitness evolution of individuals is hampered by the complexity of the problem and a clear picture is missing. Here we study a minimal model for the evolution of an ecosystem where two antagonist species struggle for survival on a lattice. Each specimen has a unique toy genome that codes for its phenotype. The gene pool of populations changes in time due to the effect of random mutations on genes (entropic force) and of interactions with the environment and between individuals (natural selection). We prove that the relevance of each gene in the manifestation of the phenotype is a key feature for evolution. In the presence of a uniform gene relevance, a mutational meltdown is observed. Natural selection acts to quench the ecosystem in a nonequilibrium state that slowly drifts, decreasing the fitness and leading to the extinction of the species. Conversely, if a specimen is provided with a heterogeneous gene relevance, natural selection wins against entropic forces and the species evolves, increasing its fitness. We finally show that heterogeneity together with spatial correlations are responsible for spontaneous sympatric speciation.
引用
收藏
页数:12
相关论文
共 50 条
  • [41] Mitochondrial Genome Evolution in a Single Protoploid Yeast Species
    Jung, Paul P.
    Friedrich, Anne
    Reisser, Cyrielle
    Hou, Jing
    Schacherer, Joseph
    G3-GENES GENOMES GENETICS, 2012, 2 (09): : 1103 - 1111
  • [42] Principles of genome evolution in the Drosophila melanogaster species group
    Ranz, Jose M.
    Maurin, Damien
    Chan, Yuk S.
    von Grotthuss, Marcin
    Hillier, LaDeana W.
    Roote, John
    Ashburner, Michael
    Bergman, Casey M.
    PLOS BIOLOGY, 2007, 5 (06) : 1366 - 1381
  • [43] Are genome evolution, organism complexity and species diversity linked?
    Stellwag, EJ
    INTEGRATIVE AND COMPARATIVE BIOLOGY, 2004, 44 (05) : 358 - 365
  • [44] Hybridization and genome evolution II: Mechanisms of species divergence and their effects on evolution in hybrids
    Bailey, Richard I.
    Eroukhmanoff, Fabrice
    Saetre, Glenn-Peter
    CURRENT ZOOLOGY, 2013, 59 (05) : 675 - 685
  • [45] Stress-response balance drives the evolution of a network module and its host genome
    Gonzalez, Caleb
    Ray, Joe Christian J.
    Manhart, Michael
    Adams, Rhys M.
    Nevozhay, Dmitry
    Morozov, Alexandre V.
    Balazsi, Gabor
    MOLECULAR SYSTEMS BIOLOGY, 2015, 11 (08)
  • [46] Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome
    Baucom, Regina S.
    Estill, James C.
    Leebens-Mack, Jim
    Bennetzen, Jeffrey L.
    GENOME RESEARCH, 2009, 19 (02) : 243 - 254
  • [47] Canopy structural heterogeneity drives α and β species-genetic diversity correlations in a Chinese subtropical forest
    Zhiliang Yao
    Xia Pan
    Xin Yang
    Xiaona Shao
    Bin Wang
    Yun Deng
    Zhiming Zhang
    Qiaoming Li
    Luxiang Lin
    Plant Diversity, 2025, 47 (01) : 106 - 114
  • [48] Localized environmental heterogeneity drives the population differentiation of two endangered and endemic Opisthopappus Shih species
    Hang Ye
    Zhi Wang
    Huimin Hou
    Jiahui Wu
    Yue Gao
    Wei Han
    Wenming Ru
    Genlou Sun
    Yiling Wang
    BMC Ecology and Evolution, 21
  • [49] Localized environmental heterogeneity drives the population differentiation of two endangered and endemic Opisthopappus Shih species
    Ye, Hang
    Wang, Zhi
    Hou, Huimin
    Wu, Jiahui
    Gao, Yue
    Han, Wei
    Ru, Wenming
    Sun, Genlou
    Wang, Yiling
    BMC ECOLOGY AND EVOLUTION, 2021, 21 (01):
  • [50] Natural selection drives genome-wide evolution via chance genetic associations
    Gompert, Zachariah
    Feder, Jeffrey L.
    Nosil, Patrik
    MOLECULAR ECOLOGY, 2022, 31 (02) : 467 - 481