Polishing the crystal ball: mining multi-omics data in dermatomyositis

被引:3
|
作者
Castillo, Rochelle L. [1 ]
Femia, Alisa N. [2 ]
机构
[1] NYU Grossman Sch Med, Div Rheumatol, Dept Med, New York, NY USA
[2] NYU Grossman Sch Med, Ronald O Perelman Dept Dermatol, New York, NY USA
关键词
Dermatomyositis (DM); myositis; precision medicine; epigenomics; genomics; transcriptomics; proteomics; IDIOPATHIC INFLAMMATORY MYOPATHIES; SINGLE NUCLEOTIDE POLYMORPHISMS; INTERSTITIAL LUNG-DISEASE; NECROSIS-FACTOR-ALPHA; DISTINCT HLA-A; ALLELIC PROFILES; EXPRESSION PROFILE; IMMUNOGENETIC RISK; PROTECTIVE FACTORS; POLYMYOSITIS;
D O I
10.21037/atm-20-5319
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Precision medicine, which recognizes and upholds the uniqueness of each individual patient and the importance of discerning these inter-individual differences on a molecular scale in order to provide truly personalized medical care, is a revolutionary approach that relies on the discovery of clinically-relevant biomarkers derived from the massive amounts of data generated by epigenomic, genomic, transcriptomic, proteomic, microbiomic, and metabolomic studies, collectively known as multi-omics. If harnessed and mined appropriately with the help of ever-evolving computational and analytic methods, the collective data from omics studies has the potential to accelerate delivery of targeted medical treatment that maximizes benefit, minimizes harm, and eliminates the "fortune-telling" inextricably linked to the prevailing trialand-error approach. For a disease such as dermatomyositis (DM), which is characterized by remarkable phenotypic heterogeneity and varying degrees of multi-organ involvement, an individualized approach that incorporates big data derived from multi-omics studies with the results of currently available serologic, histopathologic, radiologic, and electrophysiologic tests, and, most importantly, with clinical findings obtained from a thorough history and physical examination, has immense diagnostic, therapeutic, and prognostic value. In this review, we discuss omics-based research studies in DM and describe their practical applications and promising roles in guiding clinical decisions and optimizing patient outcomes.
引用
收藏
页数:9
相关论文
共 50 条
  • [41] A modern multi-omics data exploration experience with Panomicon
    Osorio, Rodolfo S. Allendes
    Kosugi, Yuji
    Nystrom-Persson, Johan T.
    Mizuguchi, Kenji
    Natsume-Kitatani, Yayoi
    BIOINFORMATICS ADVANCES, 2024, 4 (01):
  • [42] On a novel statistical method for integrating multi-omics data
    Das, Sarmistha
    Mukhopadhyay, Indranil
    GENETIC EPIDEMIOLOGY, 2020, 44 (05) : 506 - 506
  • [43] Optimizing network propagation for multi-omics data integration
    Charmpi, Konstantina
    Chokkalingam, Manopriya
    Johnen, Ronja
    Beyer, Andreas
    PLOS COMPUTATIONAL BIOLOGY, 2021, 17 (11)
  • [44] ‘Multi-omics’ data integration: applications in probiotics studies
    Iliya Dauda Kwoji
    Olayinka Ayobami Aiyegoro
    Moses Okpeku
    Matthew Adekunle Adeleke
    npj Science of Food, 7
  • [45] Methods for the integration of multi-omics data: mathematical aspects
    Bersanelli, Matteo
    Mosca, Ettore
    Remondini, Daniel
    Giampieri, Enrico
    Sala, Claudia
    Castellani, Gastone
    Milanesi, Luciano
    BMC BIOINFORMATICS, 2016, 17
  • [46] OmicsTIDE: interactive exploration of trends in multi-omics data
    Harbig, Theresa A.
    Fratte, Julian
    Krone, Michael
    Nieselt, Kay
    BIOINFORMATICS ADVANCES, 2023, 3 (01):
  • [47] Consistency and overfitting of multi-omics methods on experimental data
    McCabe, Sean D.
    Lin, Dan-Yu
    Love, Michael, I
    BRIEFINGS IN BIOINFORMATICS, 2020, 21 (04) : 1277 - 1284
  • [48] Approaches to Integrating Metabolomics and Multi-Omics Data: A Primer
    Jendoubi, Takoua
    METABOLITES, 2021, 11 (03)
  • [49] Prospects and challenges of multi-omics data integration in toxicology
    Canzler, Sebastian
    Schor, Jana
    Busch, Wibke
    Schubert, Kristin
    Rolle-Kampczyk, Ulrike E.
    Seitz, Herve
    Kamp, Hennicke
    von Bergen, Martin
    Buesen, Roland
    Hackermueller, Joerg
    ARCHIVES OF TOXICOLOGY, 2020, 94 (02) : 371 - 388
  • [50] Vertical and horizontal integration of multi-omics data with miodin
    Ulfenborg, Benjamin
    BMC BIOINFORMATICS, 2019, 20 (01)