Polishing the crystal ball: mining multi-omics data in dermatomyositis

被引:3
作者
Castillo, Rochelle L. [1 ]
Femia, Alisa N. [2 ]
机构
[1] NYU Grossman Sch Med, Div Rheumatol, Dept Med, New York, NY USA
[2] NYU Grossman Sch Med, Ronald O Perelman Dept Dermatol, New York, NY USA
关键词
Dermatomyositis (DM); myositis; precision medicine; epigenomics; genomics; transcriptomics; proteomics; IDIOPATHIC INFLAMMATORY MYOPATHIES; SINGLE NUCLEOTIDE POLYMORPHISMS; INTERSTITIAL LUNG-DISEASE; NECROSIS-FACTOR-ALPHA; DISTINCT HLA-A; ALLELIC PROFILES; EXPRESSION PROFILE; IMMUNOGENETIC RISK; PROTECTIVE FACTORS; POLYMYOSITIS;
D O I
10.21037/atm-20-5319
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Precision medicine, which recognizes and upholds the uniqueness of each individual patient and the importance of discerning these inter-individual differences on a molecular scale in order to provide truly personalized medical care, is a revolutionary approach that relies on the discovery of clinically-relevant biomarkers derived from the massive amounts of data generated by epigenomic, genomic, transcriptomic, proteomic, microbiomic, and metabolomic studies, collectively known as multi-omics. If harnessed and mined appropriately with the help of ever-evolving computational and analytic methods, the collective data from omics studies has the potential to accelerate delivery of targeted medical treatment that maximizes benefit, minimizes harm, and eliminates the "fortune-telling" inextricably linked to the prevailing trialand-error approach. For a disease such as dermatomyositis (DM), which is characterized by remarkable phenotypic heterogeneity and varying degrees of multi-organ involvement, an individualized approach that incorporates big data derived from multi-omics studies with the results of currently available serologic, histopathologic, radiologic, and electrophysiologic tests, and, most importantly, with clinical findings obtained from a thorough history and physical examination, has immense diagnostic, therapeutic, and prognostic value. In this review, we discuss omics-based research studies in DM and describe their practical applications and promising roles in guiding clinical decisions and optimizing patient outcomes.
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页数:9
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共 52 条
  • [41] The ACTN3 R577X polymorphism is associated with inflammatory myopathies in a Mexican population
    Sandoval-Garcia, F.
    Petri, M. H.
    Saavedra, M. A.
    Cruz-Reyes, C. V.
    Jara-Quezada, L. J.
    Davalos-Rodriguez, I. P.
    Salazar-Paramo, M.
    Gamez-Nava, J. I.
    Gonzalez-Lopez, L.
    Garcia-Iglesias, T.
    Corona-Sanchez, E. G.
    Zavaleta-Muniz, S.
    Vargas-Ramirez, R.
    Vazquez-Del Mercado, M.
    Martin-Marquez, B. T.
    [J]. SCANDINAVIAN JOURNAL OF RHEUMATOLOGY, 2012, 41 (05) : 396 - 400
  • [42] The effect of cigarette smoking on the clinical and serological phenotypes of polymyositis and dermatomyositis
    Schiffenbauer, Adam
    Faghihi-Kashani, Sara
    O'Hanlon, Terrence P.
    Flegel, Willy A.
    Adams, Sharon D.
    Targoff, Ira N.
    Oddis, Chester V.
    Ytterberg, Steven R.
    Aggarwal, Rohit
    Christopher-Stine, Lisa
    Shamim, Ejaz A.
    Dellaripa, Paul F.
    Danoff, Sonye K.
    Mammen, Andrew L.
    Miller, Frederick W.
    [J]. SEMINARS IN ARTHRITIS AND RHEUMATISM, 2018, 48 (03) : 504 - 512
  • [43] Integration of MicroRNA, mRNA, and Protein Expression Data for the Identification of Cancer-Related MicroRNAs
    Seo, Jiyoun
    Jin, Daeyong
    Choi, Chan-Hun
    Lee, Hyunju
    [J]. PLOS ONE, 2017, 12 (01):
  • [44] Differences in idiopathic inflammatory myopathy phenotypes and genotypes between Mesoamerican Mestizos and North American Caucasians - Ethnogeographic influences in the genetics and clinical expression of myositis
    Shamim, EA
    Rider, LG
    Pandey, JP
    O'Hanlon, TP
    Jara, LJ
    Samayoa, EA
    Burgos-Vargas, R
    Vazquez-Mellado, J
    Alcocer-Varela, J
    Salazar-Paramo, M
    Kutzbach, AG
    Malley, JD
    Targoff, IN
    Garcia-De La Torre, I
    Miller, FW
    [J]. ARTHRITIS AND RHEUMATISM, 2002, 46 (07): : 1885 - 1893
  • [45] Disease Specific Autoantibodies in Idiopathic Inflammatory Myopathies
    Stuhlmueller, Bruno
    Schneider, Udo
    Gonzalez-Gonzalez, Jose-B
    Feist, Eugen
    [J]. FRONTIERS IN NEUROLOGY, 2019, 10
  • [46] Association between a C8orf13-BLK Polymorphism and Polymyositis/Dermatomyositis in the Japanese Population: An Additive Effect with STAT4 on Disease Susceptibility
    Sugiura, Tomoko
    Kawaguchi, Yasushi
    Goto, Kanako
    Hayashi, Yukiko
    Gono, Takahisa
    Furuya, Takefumi
    Nishino, Ichizo
    Yamanaka, Hisashi
    [J]. PLOS ONE, 2014, 9 (03):
  • [47] Gene expression profiling in DQA1*0501+ children with untreated dermatomyositis:: A novel model of pathogenesis
    Tezak, Z
    Hoffman, EP
    Lutz, JL
    Fedczyna, TO
    Stephan, D
    Bremer, EG
    Krasnoselska-Riz, I
    Kumar, A
    Pachman, LM
    [J]. JOURNAL OF IMMUNOLOGY, 2002, 168 (08) : 4154 - 4163
  • [48] IL18-containing 5-gene signature distinguishes histologically identical dermatomyositis and lupus erythematosus skin lesions
    Tsoi, Lam C.
    Gharaee-Kermani, Mehrnaz
    Berthier, Celine C.
    Nault, Tori
    Hile, Grace A.
    Estadt, Shannon N.
    Patrick, Matthew T.
    Wasikowski, Rachael
    Billi, Allison C.
    Lowe, Lori
    Reed, Tamra J.
    Gudjonsson, Johann E.
    Kahlenberg, J. Michelle
    [J]. JCI INSIGHT, 2020, 5 (16)
  • [49] Positive association of genetic variations in the phospholipase C-like 1 gene with dermatomyositis in Chinese Han
    Wang, Qian
    Chen, Si
    Li, Yuan
    Li, Ping
    Wu, Chanyuan
    Wu, Ziyan
    Wu, Qingjun
    Sun, Fei
    Li, Jing
    Zheng, Wenjie
    Deng, Chuiwen
    Zhang, Fengchun
    Li, Yongzhe
    [J]. IMMUNOLOGIC RESEARCH, 2016, 64 (01) : 204 - 212
  • [50] Associations of tumor necrosis factor α and HLA polymorphisms with adult dermatomyositis:: Implications for a unique pathogenesis
    Werth, VP
    Callen, JP
    Ang, G
    Sullivan, KE
    [J]. JOURNAL OF INVESTIGATIVE DERMATOLOGY, 2002, 119 (03) : 617 - 620