Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae

被引:65
作者
Chen, Chuyi [1 ]
Gu, Yuyang [1 ]
Philippe, Julien [2 ]
Zhang, Peiran [1 ]
Bachman, Hunter [1 ]
Zhang, Jinxin [1 ]
Mai, John [3 ]
Rufo, Joseph [1 ]
Rawls, John F. [4 ]
Davis, Erica E. [2 ,5 ,6 ]
Katsanis, Nicholas [2 ,5 ,6 ]
Huang, Tony Jun [1 ]
机构
[1] Duke Univ, Dept Mech Engn & Mat Sci, Durham, NC 27706 USA
[2] Duke Univ Med Ctr, Ctr Human Dis Modeling, Durham, NC USA
[3] Univ Southern Calif, Alfred E Mann Inst Biomed Engn, Los Angeles, CA 90007 USA
[4] Duke Univ, Dept Mol Genet & Microbiol, Durham, NC USA
[5] Ann & Robert H Lurie Childrens Hosp Chicago, Stanley Manne Childrens Res Inst, Adv Ctr Translat & Genet Med ACT GeM, Chicago, IL USA
[6] Northwestern Univ, Dept Pediat, Feinberg Sch Med, Chicago, IL 60611 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
ALCOHOL EXPOSURE; GENE-EXPRESSION; HUMAN-DISEASE; SINGLE CELLS; MANIPULATION; MODEL; FISH; TOMOGRAPHY; TOOLS; RECONSTRUCTION;
D O I
10.1038/s41467-021-21373-3
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Modern biomedical research and preclinical pharmaceutical development rely heavily on the phenotyping of small vertebrate models for various diseases prior to human testing. In this article, we demonstrate an acoustofluidic rotational tweezing platform that enables contactless, high-speed, 3D multispectral imaging and digital reconstruction of zebrafish larvae for quantitative phenotypic analysis. The acoustic-induced polarized vortex streaming achieves contactless and rapid (similar to 1s/rotation) rotation of zebrafish larvae. This enables multispectral imaging of the zebrafish body and internal organs from different viewing perspectives. Moreover, we develop a 3D reconstruction pipeline that yields accurate 3D models based on the multi-view images for quantitative evaluation of basic morphological characteristics and advanced combinations of metrics. With its contactless nature and advantages in speed and automation, our acoustofluidic rotational tweezing system has the potential to be a valuable asset in numerous fields, especially for developmental biology, small molecule screening in biochemistry, and pre-clinical drug development in pharmacology.
引用
收藏
页数:13
相关论文
共 71 条
  • [1] Rotational manipulation of single cells and organisms using acoustic waves
    Ahmed, Daniel
    Ozcelik, Adem
    Bojanala, Nagagireesh
    Nama, Nitesh
    Upadhyay, Awani
    Chen, Yuchao
    Hanna-Rose, Wendy
    Huang, Tony Jun
    [J]. NATURE COMMUNICATIONS, 2016, 7
  • [2] Ahrens MB, 2013, NAT METHODS, V10, P413, DOI [10.1038/nmeth.2434, 10.1038/NMETH.2434]
  • [3] Experimental and numerical investigation of acoustic streaming excited by using a surface acoustic wave device on a 128° YX-LiNbO3 substrate
    Alghane, M.
    Chen, B. X.
    Fu, Y. Q.
    Li, Y.
    Luo, J. K.
    Walton, A. J.
    [J]. JOURNAL OF MICROMECHANICS AND MICROENGINEERING, 2011, 21 (01)
  • [4] Anderson RM., 2010, METHYLATION PANCREAS, V334, P213
  • [5] Focusing of sub-micrometer particles and bacteria enabled by two-dimensional acoustophoresis
    Antfolk, M.
    Muller, P. B.
    Augustsson, P.
    Bruus, H.
    Laurell, T.
    [J]. LAB ON A CHIP, 2014, 14 (15) : 2791 - 2799
  • [6] Arifin WN, 2017, MALAYS J MED SCI, V24, P101, DOI 10.21315/mjms2017.24.5.11
  • [7] Acoustic radiation- and streaming-induced microparticle velocities determined by microparticle image velocimetry in an ultrasound symmetry plane
    Barnkob, Rune
    Augustsson, Per
    Laurell, Thomas
    Bruus, Henrik
    [J]. PHYSICAL REVIEW E, 2012, 86 (05):
  • [8] Dynamic and non-contact 3D sample rotation for microscopy
    Berndt, Frederic
    Shah, Gopi
    Power, Rory M.
    Brugues, Jan
    Huisken, Jan
    [J]. NATURE COMMUNICATIONS, 2018, 9
  • [9] Chen C, 2021, **DATA OBJECT**, DOI [10.5281/zenodo.4422134, DOI 10.5281/ZENODO.4422134]
  • [10] Cignoni P., 2008, EUR IT CHAPT C, DOI [DOI 10.2312/LOCALCHAPTEREVENTS/ITALCHAP/ITALIANCHAPCONF2008/129-136, 10.2312/LocalChapterEvents/ItalChap/ItalianChapConf2008/129-136]