The complete genome sequence of the Gram-positive bacterium Bacillus subtilis

被引:3084
作者
Kunst, F
Ogasawara, N
Moszer, I
Albertini, AM
Alloni, G
Azevedo, V
Bertero, MG
Bessieres, P
Bolotin, A
Borchert, S
Borriss, R
Boursier, L
Brans, A
Braun, M
Brignell, SC
Bron, S
Brouillet, S
Bruschi, CV
Caldwell, B
Capuano, V
Carter, NM
Choi, SK
Codani, JJ
Connerton, IF
Cummings, NJ
Daniel, RA
Denizot, F
Devine, KM
Dusterhoft, A
Ehrlich, SD
Emmerson, PT
Entian, KD
Errington, J
Fabret, C
Ferrari, E
Foulger, D
Fritz, C
Fujita, M
Fujita, Y
Fuma, S
Galizzi, A
Galleron, N
Ghim, SY
Glaser, P
Goffeau, A
Golightly, EJ
Grandi, G
Guiseppi, G
Guy, BJ
Haga, K
机构
[1] NARA INST SCI & TECHNOL, GRAD SCH BIOL SCI, NARA 63001, JAPAN
[2] INST PASTEUR, UNITE REGULAT EXPRESS GENET, F-75724 PARIS 15, FRANCE
[3] UNIV PAVIA, DIPARTIMENTO GENET & MICROBIOL, I-27100 PAVIA, ITALY
[4] INRA, F-78352 JOUY EN JOSAS, FRANCE
[5] UNIV FRANKFURT, INST MIKROBIOL, D-60439 FRANKFURT, GERMANY
[6] HUMBOLDT UNIV BERLIN, INST GENET & MIKROBIOL, D-10115 BERLIN, GERMANY
[7] UNIV LIEGE, CTR INGN PROT, INST CHIM B6, B-4000 LIEGE, BELGIUM
[8] QIAGEN GMBH, D-40724 HILDEN, GERMANY
[9] UNIV NEWCASTLE UPON TYNE, SCH MED, DEPT MICROBIOL IMMUNOL & VIROL SCI, NEWCASTLE UPON TYNE NE2 4HH, TYNE & WEAR, ENGLAND
[10] UNIV GRONINGEN, DEPT GENET, NL-9751 NN HAREN, NETHERLANDS
[11] UNIV PARIS 06, ATELIER BIOINFORMAT, F-75005 PARIS, FRANCE
[12] INT CTR GENET ENGN & BIOTECHNOL, AREA SCI PK, I-34012 TRIESTE, ITALY
[13] GENENCOR INT, PALO ALTO, CA 94304 USA
[14] KRIBB, APPL MICROBIOL RES DIV, BACTERIAL MOL GENET RES UNIT, TAEJON 305600, SOUTH KOREA
[15] INST NATL RECH INFORMAT & AUTOMAT, F-78153 LE CHESNAY, FRANCE
[16] INST FOOD RES, READING LAB, DEPT FOOD MACROMOL SCI, READING RG6 6BZ, BERKS, ENGLAND
[17] UNIV OXFORD, SIR WILLIAM DUNN SCH PATHOL, OXFORD OX1 3RE, ENGLAND
[18] CNRS, CHIM BACTERIENNE LAB, F-13402 MARSEILLE 09, FRANCE
[19] TRINITY COLL DUBLIN, DEPT GENET, DUBLIN, IRELAND
[20] UNIV NEWCASTLE UPON TYNE, SCH MED, DEPT BIOCHEM & GENET, NEWCASTLE UPON TYNE NE2 4HH, TYNE & WEAR, ENGLAND
[21] NATL INST GENET, CTR RADIOISOTOPE, MISHIMA, SHIZUOKA 411, JAPAN
[22] FUKUYAMA UNIV, FAC ENGN, DEPT BIOTECHNOL, HIROSHIMA 72902, JAPAN
[23] UNIV TSUKUBA, INST BIOL SCI, TSUKUBA, IBARAKI 305, JAPAN
[24] UNIV CATHOLIQUE LOUVAIN, UNITE BIOCHIM PHYSIOL, FAC SCI AGRON, B-1348 LOUVAIN, BELGIUM
[25] NOVO NORDISK BIOTECH, DAVIS, CA 95616 USA
[26] ENIRICERCHE SPA, I-20097 SAN DONATO MILANESE, MILAN, ITALY
[27] UNIV TOKYO, INST MOL & CELLULAR BIOL, BUNKYO KU, TOKYO 113, JAPAN
[28] UNIV VERSAILLES, LAB GENOME & INFORMAT, F-78035 VERSAILLES, FRANCE
[29] TOKYO UNIV AGR & TECHNOL, FAC AGR, FUCHU, TOKYO 183, JAPAN
[30] MITSUBISHI KASEI INST LIFE SCI, MACHIDA, TOKYO 194, JAPAN
[31] INST PASTEUR, SERV INFORMAT SCI, F-75724 PARIS 15, FRANCE
[32] UNIV LAUSANNE, INST GENET & BIOL MICROBIENNES, CH-1005 LAUSANNE, SWITZERLAND
[33] FREE UNIV AMSTERDAM, FAC BIOL, DEPT MOL MICROBIOL, MBW BCA, NL-1081 HV AMSTERDAM, NETHERLANDS
[34] CHONGJU UNIV, COLL SCI & ENGN, CHONJU, SOUTH KOREA
[35] UNIV PARIS 11, INST GENET & MICROBIOL, CNRS, URA 2225, F-91405 ORSAY, FRANCE
[36] CSIC, CTR NACL BIOTECNOL, E-28049 MADRID, SPAIN
[37] NATL INST BASIC BIOL, OKAZAKI, AICHI 444, JAPAN
[38] GESELL ANAL TECH & CONSULTING MBH, D-78467 CONSTANCE, GERMANY
[39] FAC AGRON, DEPT MICROBIOL, B-5030 GEMBLOUX, BELGIUM
[40] BMF, BIOTECH RES, D-69434 HIRSCHHORN, GERMANY
[41] SHINSHU UNIV, FAC TEXT SCI & TECHNOL, DEPT APPL BIOL, UEDA, NAGANO 386, JAPAN
[42] UNIV TOKYO, INST MED SCI, CTR HUMAN GENOME, MINATO KU, TOKYO 108, JAPAN
[43] TOKAI UNIV, SCH MARINE SCI & TECHNOL, DEPT MARINE SCI, SHIZUOKA 424, JAPAN
[44] COMMISS EUROPEAN COMMUNITIES, DG XII E 1, SDME 878, B-1049 BRUSSELS, BELGIUM
[45] AGOWA GMBH, D-12489 BERLIN, GERMANY
关键词
D O I
10.1038/36786
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Bacillus subtilis Is the best-characterized member of the Gram-positive bacteria. Its genome of 4,214,810 base pairs comprises 4,100 protein-coding genes. Of these protein-coding genes, 53% are represented once, while a quarter of the genome corresponds to several gene families that have been greatly expanded by gene duplication, the largest family containing 77 putative ATP-binding transport proteins. In addition, a large proportion of the genetic capacity is devoted to the utilization of a variety of carbon sources, including many plant-derived molecules. The identification of five signal peptidase genes, as well as several genes for components of the secretion apparatus, is important given the capacity of Bacillus strains to secrete large amounts of industrially important enzymes. Many of the genes are involved in the synthesis of secondary metabolites, Including antibiotics, that are more typically associated with Streptomyces species. The genome contains at least ten prophages or remnants of prophages, indicating that bacteriophage Infection has played an important evolutionary role in horizontal gene transfer, in particular In the propagation of bacterial pathogenesis.
引用
收藏
页码:249 / 256
页数:8
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