Gallic Acid Dimer As a Double π-Hole Donor: Evidence from X-ray, Theoretical Calculations, and Generalization from the Cambridge Structural Database

被引:11
作者
Prohens, Rafel [1 ,2 ]
de Sande, Dafne [2 ]
Font-Bardia, Merce [3 ]
Franconetti, Antonio [4 ]
Gonzalez, Jose F. [5 ]
Frontera, Antonio [2 ]
机构
[1] Univ Barcelona, Ctr Cient & Tecnol, Unitat Polimorfisme & Calorimetria, Baldiri Reixac 10, E-08028 Barcelona, Spain
[2] Ctr Intelligent Res Crystal Engn SL, Palma De Mallorca, Spain
[3] Univ Barcelona, Ctr Cient & Tecnol, Unitat Difraccio Raigs X, Barcelona, Spain
[4] Univ Illes Balears, Dept Quim, Crta Valldemossa Km 7-5, Palma De Mallorca 07122, Baleares, Spain
[5] Univ Illes Balears, Serv Cient Tecn, Crta Valldemossa Km 7-5, Palma De Mallorca 07122, Baleares, Spain
关键词
TOPOLOGICAL ANALYSIS; ELECTRON-DENSITY; HALOGEN BONDS; TRIEL BONDS; COMPLEXES; DESIGN; CHARGE; ANION; BORON;
D O I
10.1021/acs.cgd.9b00387
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
In this work, we demonstrate that the centrosymmetric eight-membered supramolecular ring R-2(2)(8) that is formed upon dimerization of benzoic acids has a marked tendency to establish pi-hole interactions with electron-rich atoms. We have used the Cambridge Structural Database to demonstrate the preference of carboxylic acid dimers to form donor-acceptor interactions involving pi-holes located at the C atoms above and below the molecular plane. Moreover, we have carried out DFT calculations (PBEO-D3/def2-TZVP) to investigate the geometric and energetic features of these interactions and how they are affected by the substituents of the aromatic ring. Finally, as an example we report the synthesis and X-ray characterization of a solvate of gallic acid with dioxane, where two molecules of dioxane are located above and below the eight-membered supramolecular ring, forming two symmetrically equivalent O center dot center dot center dot C pi-hole interactions.
引用
收藏
页码:3989 / 3997
页数:9
相关论文
共 72 条
[1]   Effects of Charge and Substituent on the S•••N Chalcogen Bond [J].
Adhikari, Upendra ;
Scheiner, Steve .
JOURNAL OF PHYSICAL CHEMISTRY A, 2014, 118 (17) :3183-3192
[2]   ELECTRONIC-STRUCTURE CALCULATIONS ON WORKSTATION COMPUTERS - THE PROGRAM SYSTEM TURBOMOLE [J].
AHLRICHS, R ;
BAR, M ;
HASER, M ;
HORN, H ;
KOLMEL, C .
CHEMICAL PHYSICS LETTERS, 1989, 162 (03) :165-169
[3]  
[Anonymous], 1999, SAINT SOFTW US GUID
[4]  
[Anonymous], 2004, SADABS
[5]  
[Anonymous], 2008, SAINT VERS 7 60A
[6]  
[Anonymous], 2008, SADABS V 2008 1
[7]   A QUANTUM-THEORY OF MOLECULAR-STRUCTURE AND ITS APPLICATIONS [J].
BADER, RFW .
CHEMICAL REVIEWS, 1991, 91 (05) :893-928
[8]   A bond path: A universal indicator of bonded interactions [J].
Bader, RFW .
JOURNAL OF PHYSICAL CHEMISTRY A, 1998, 102 (37) :7314-7323
[9]  
Bartlett GJ, 2010, NAT CHEM BIOL, V6, P615, DOI [10.1038/NCHEMBIO.406, 10.1038/nchembio.406]
[10]   π-hole interactions at work: crystal engineering with nitro-derivatives [J].
Bauza, Antonio ;
Sharko, Anastasiya V. ;
Senchyk, Ganna A. ;
Rusanov, Eduard B. ;
Frontera, Antonio ;
Domasevitch, Kostiantyn V. .
CRYSTENGCOMM, 2017, 19 (14) :1933-1937