The K2(9-ethylguanine)122+ quadruplex is more stable to unimolecular dissociation than the K(9-ethylguanine)8+ quadruplex in the gas phase: a BIRD, energy resolved SORI-CID, IRMPD spectroscopic, and computational study

被引:4
作者
Azargun, Mohammad [1 ]
Meister, Paul J. [2 ]
Gauld, James W. [2 ]
Fridgen, Travis D. [1 ]
机构
[1] Mem Univ Newfoundland, Dept Chem, St John, NF, Canada
[2] Univ Windsor, Dept Chem & Biochem, Windsor, ON, Canada
基金
加拿大创新基金会; 加拿大自然科学与工程研究理事会;
关键词
TELOMERIC G-QUADRUPLEX; ALKALI-METAL CATIONS; NONCOVALENT INTERACTIONS; DNA STRUCTURES; DENSITY FUNCTIONALS; GUANINE QUARTET; PROMOTER REGION; CONTAINING RNA; NA+; KINETICS;
D O I
10.1039/c9cp01651a
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A combination of experimental trapped-ion mass spectrometric studies and computational chemistry has been used in the present work to assess the intrinsic properties of the potassiated 9-ethylguanine (9eG) self-assembled quadruplex, K-2(9eG)(12)(2+), in the gas phase. Infrared multiple photon dissociation (IRMPD) spectroscopy in the N-H/C-H stretching region (2700-3800 cm(-1)) revealed that this G-quadruplex is a sandwich-type structure with two G-tetrads sandwiching each of the two K+, very similar to the structure determined previously for the K(9eG)(8)(+) complexes. The stability of K-2(9eG)(12)(2+) toward unimolecular dissociation and its binding energy were examined using energy-resolved sustained off-resonance collision induced dissociation (SORI-CID) and blackbody infrared radiative dissociation (BIRD) kinetics experiments. SORI-CID experiments showed that the self-assembled K-2(9eG)(12)(2+) complex undergoes charge separation forming K(9eG)(8)(+) and K(9eG)(4)(+) compared to K(9eG)(8)(+) which loses neutral 9eG. More interestingly, K-2(9eG)(12)(2+) is more stable toward unimolecular dissociation activated by SORI-CID than the K(9eG)(8)(+) complex. Temperature dependent BIRD kinetics for K-2(9eG)(12)(2+) were consistent with energy-resolved SORI-CID results showing K-2(9eG)(12)(2+) to have an activation energy of 225 +/- 15 kJ mol(-1), approximately 50 kJ mol(-1) greater than that determined for K(9eG)(8)(+). The extra stability of K-2(9eG)(12)(2+) is apparently not thermodynamic stability, but most likely due to an energy barrier for dissociation.
引用
收藏
页码:15319 / 15326
页数:8
相关论文
共 72 条
  • [1] Toward reliable density functional methods without adjustable parameters: The PBE0 model
    Adamo, C
    Barone, V
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1999, 110 (13) : 6158 - 6170
  • [2] [Anonymous], 2005, ANGEW CHEM-GER EDIT, DOI DOI 10.1002/ANGE.200501506
  • [3] Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif
    Arora, Amit
    Dutkiewicz, Mariola
    Scaria, Vinod
    Hariharan, Manoj
    Maiti, Souvik
    Kurreck, Jens
    [J]. RNA, 2008, 14 (07) : 1290 - 1296
  • [4] Telomeres and aging
    Aubert, Geraldine
    Lansdorp, Peter M.
    [J]. PHYSIOLOGICAL REVIEWS, 2008, 88 (02) : 557 - 579
  • [5] The intrinsic stabilities and structures of alkali metal cationized guanine quadruplexes
    Azargun, M.
    Jami-Alahmadi, Y.
    Fridgen, T. D.
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2017, 19 (02) : 1281 - 1287
  • [6] Guanine tetrads: an IRMPD spectroscopy, energy resolved SORI-CID, and computational study of M(9-ethylguanine)4+ (M = Li, Na, K, Rb, Cs) in the gas phase
    Azargun, Mohammad
    Fridgen, Travis D.
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2015, 17 (39) : 25778 - 25785
  • [7] Repression of Translation of Human Estrogen Receptor α by G-Quadruplex Formation
    Balkwill, Graham D.
    Derecka, Kamila
    Garner, Thomas P.
    Hodgman, Charlie
    Flint, Anthony P. F.
    Searle, Mark S.
    [J]. BIOCHEMISTRY, 2009, 48 (48) : 11487 - 11495
  • [8] DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE
    BECKE, AD
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) : 5648 - 5652
  • [9] Quadruplex DNA: sequence, topology and structure
    Burge, Sarah
    Parkinson, Gary N.
    Hazel, Pascale
    Todd, Alan K.
    Neidle, Stephen
    [J]. NUCLEIC ACIDS RESEARCH, 2006, 34 (19) : 5402 - 5415
  • [10] Structures and physical properties of gaseous metal cationized biological ions
    Burt, Michael B.
    Fridgen, Travis D.
    [J]. EUROPEAN JOURNAL OF MASS SPECTROMETRY, 2012, 18 (02) : 235 - 250