Mission critical: the need for proteomics in the era of next-generation sequencing and precision medicine

被引:20
作者
Cayer, Devon M. [1 ]
Nazor, Kristopher L. [1 ]
Schork, Nicholas J. [1 ,2 ,3 ,4 ]
机构
[1] MYi Diagnost & Discovery, La Jolla, CA USA
[2] J Craig Venter Inst, La Jolla, CA USA
[3] Univ Calif San Diego, La Jolla, CA 92093 USA
[4] Translat Genom Res Inst TGen, Phoenix, AZ USA
关键词
CIRCULATING TUMOR DNA; MASS-SPECTROMETRY; HIGH-THROUGHPUT; PROTEIN ABUNDANCE; CANCER; PLASMA; CYTOMETRY; EXOSOMES; QUANTIFICATION; BIOMARKERS;
D O I
10.1093/hmg/ddw214
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Next generation sequencing (NGS) has ignited an unprecedented pace of discovery in the biomedical sciences that is fundamentally transforming the way that we understand, diagnose and treat disease, and has motivated the belief that true precision medicine - medicine that is tailored to an individual's genetic, biochemical and exposure profile - will be a reality in the near term. With minimal sample requirement, NGS can enable the concurrent genome-wide study of genetic variations, transcriptomes, and certain epigenetic modifications. However, interrogating proteins as efficiently as DNA and RNA can be interrogated with NGS is lacking and this hampers more comprehensive views of molecular physiology and limits advances in biomedical science and precision medicine. The fact is that innovations in proteomic technologies pale in comparison to the advances in NGS, with current methodologies suffering from issues related to reproducibility, sensitivity, sample requirements, and limited multiplexing capacity. The development of proteomic technologies to overcome these limitations would fill the void in systems biology research, catalyze clinical innovations, and expedite the realization of precision medicine.
引用
收藏
页码:R182 / R189
页数:8
相关论文
共 103 条
[1]   Digital Quantification of Proteins and mRNA in Single Mammalian Cells [J].
Albayrak, Cem ;
Jordi, Christian A. ;
Zechner, Christoph ;
Lin, Jing ;
Bichsel, Colette A. ;
Khammash, Mustafa ;
Tay, Savas .
MOLECULAR CELL, 2016, 61 (06) :914-924
[2]   Clinical Applications of Circulating Tumor Cells and Circulating Tumor DNA as Liquid Biopsy [J].
Alix-Panabieres, Catherine ;
Pantel, Klaus .
CANCER DISCOVERY, 2016, 6 (05) :479-491
[3]   Exosomes serve as tumour markers for personalized diagnostics owing to their important role in cancer metastasis [J].
An, Taixue ;
Qin, Sihua ;
Xu, Yong ;
Tang, Yueting ;
Huang, Yiyao ;
Bo Situ ;
Inal, Jameel M. ;
Zheng, Lei .
JOURNAL OF EXTRACELLULAR VESICLES, 2015, 4
[4]   Squeezing more value from the analytes we have: personal baselines for multiple analytes in serial DBS [J].
Anderson, Leigh ;
Razavi, Morteza ;
Skates, Steven ;
Anderson, Norman G. ;
Pearson, Terry W. .
BIOANALYSIS, 2016, 8 (15) :1539-1542
[5]   The human plasma proteome - History, character, and diagnostic prospects [J].
Anderson, NL ;
Anderson, NG .
MOLECULAR & CELLULAR PROTEOMICS, 2002, 1 (11) :845-867
[6]   Evaluation of a 12-Color Flow Cytometry Panel to Study Lymphocyte, Monocyte, and Dendritic Cell Subsets in Humans [J].
Autissier, Patrick ;
Soulas, Caroline ;
Burdo, Tricia H. ;
Williams, Kenneth C. .
CYTOMETRY PART A, 2010, 77A (05) :410-419
[7]   BLAME IT ON THE ANTIBODIES [J].
Baker, Monya .
NATURE, 2015, 521 (7552) :274-276
[8]   Mass Cytometry: Technique for Real Time Single Cell Multitarget Immunoassay Based on Inductively Coupled Plasma Time-of-Flight Mass Spectrometry [J].
Bandura, Dmitry R. ;
Baranov, Vladimir I. ;
Ornatsky, Olga I. ;
Antonov, Alexei ;
Kinach, Robert ;
Lou, Xudong ;
Pavlov, Serguei ;
Vorobiev, Sergey ;
Dick, John E. ;
Tanner, Scott D. .
ANALYTICAL CHEMISTRY, 2009, 81 (16) :6813-6822
[9]   Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum [J].
Bendall, Sean C. ;
Simonds, Erin F. ;
Qiu, Peng ;
Amir, El-ad D. ;
Krutzik, Peter O. ;
Finck, Rachel ;
Bruggner, Robert V. ;
Melamed, Rachel ;
Trejo, Angelica ;
Ornatsky, Olga I. ;
Balderas, Robert S. ;
Plevritis, Sylvia K. ;
Sachs, Karen ;
Pe'er, Dana ;
Tanner, Scott D. ;
Nolan, Garry P. .
SCIENCE, 2011, 332 (6030) :687-696
[10]   Detection of Circulating Tumor DNA in Early- and Late-Stage Human Malignancies [J].
Bettegowda, Chetan ;
Sausen, Mark ;
Leary, Rebecca J. ;
Kinde, Isaac ;
Wang, Yuxuan ;
Agrawal, Nishant ;
Bartlett, Bjarne R. ;
Wang, Hao ;
Luber, Brandon ;
Alani, Rhoda M. ;
Antonarakis, Emmanuel S. ;
Azad, Nilofer S. ;
Bardelli, Alberto ;
Brem, Henry ;
Cameron, John L. ;
Lee, Clarence C. ;
Fecher, Leslie A. ;
Gallia, Gary L. ;
Gibbs, Peter ;
Le, Dung ;
Giuntoli, Robert L. ;
Goggins, Michael ;
Hogarty, Michael D. ;
Holdhoff, Matthias ;
Hong, Seung-Mo ;
Jiao, Yuchen ;
Juhl, Hartmut H. ;
Kim, Jenny J. ;
Siravegna, Giulia ;
Laheru, Daniel A. ;
Lauricella, Calogero ;
Lim, Michael ;
Lipson, Evan J. ;
Marie, Suely Kazue Nagahashi ;
Netto, George J. ;
Oliner, Kelly S. ;
Olivi, Alessandro ;
Olsson, Louise ;
Riggins, Gregory J. ;
Sartore-Bianchi, Andrea ;
Schmidt, Kerstin ;
Shih, Ie-Ming ;
Oba-Shinjo, Sueli Mieko ;
Siena, Salvatore ;
Theodorescu, Dan ;
Tie, Jeanne ;
Harkins, Timothy T. ;
Veronese, Silvio ;
Wang, Tian-Li ;
Weingart, Jon D. .
SCIENCE TRANSLATIONAL MEDICINE, 2014, 6 (224)