Quantitative thermodynamic model for globular protein folding

被引:2
|
作者
Yakubovich, Alexander V. [1 ]
Solov'yov, Andrey V. [1 ]
机构
[1] MBN Res Ctr, D-60438 Frankfurt, Germany
来源
EUROPEAN PHYSICAL JOURNAL D | 2014年 / 68卷 / 06期
关键词
STAPHYLOCOCCAL NUCLEASE; MOLECULAR-DYNAMICS; CONFORMATIONAL-CHANGES; PROPOSED MECHANISM; POLYPEPTIDE-CHAINS; PHASE-TRANSITION; ENERGETICS; RESOLUTION; SOLVATION; ENTROPY;
D O I
10.1140/epjd/e2014-50097-3
中图分类号
O43 [光学];
学科分类号
070207 ; 0803 ;
摘要
We present a statistical mechanics formalism for theoretical description of the process of protein folding <-> unfolding transition in water environment. The formalism is based on the construction of the partition function of a protein obeying two-stage-like folding kinetics. Using the statistical mechanics model of solvation of hydrophobic hydrocarbons we obtain the partition function of infinitely diluted solution of proteins in water environment. The calculated dependencies of the protein heat capacities upon temperature are compared with the corresponding results of experimental measurements for staphylococcal nuclease and metmyoglobin.
引用
收藏
页数:12
相关论文
共 50 条
  • [21] Secondary Structure Prediction and Folding of Globular Protein: Refolding of Ferredoxin
    Yukio Kobayashi
    Nobuhiko Saitô
    Journal of Protein Chemistry, 2001, 20 : 647 - 654
  • [22] Examining a Thermodynamic Order Parameter of Protein Folding
    Song-Ho Chong
    Sihyun Ham
    Scientific Reports, 8
  • [23] Thermodynamic control and dynamical regimes in protein folding
    Faisca, PFN
    Ball, RC
    JOURNAL OF CHEMICAL PHYSICS, 2002, 116 (16): : 7231 - 7237
  • [24] Protein folding as a nonlinear nonequilibrium thermodynamic process
    Popov, EM
    BIOCHEMISTRY AND MOLECULAR BIOLOGY INTERNATIONAL, 1999, 47 (03): : 443 - 453
  • [25] Examining a Thermodynamic Order Parameter of Protein Folding
    Chong, Song-Ho
    Ham, Sihyun
    SCIENTIFIC REPORTS, 2018, 8
  • [26] Gelation of a model globular protein
    Yan, Hui
    Saiani, Alberto
    Miller, Aline F.
    MACROMOLECULAR SYMPOSIA, 2007, 251 : 112 - 117
  • [27] DYNAMIC MONTE-CARLO SIMULATIONS OF A NEW LATTICE MODEL OF GLOBULAR PROTEIN FOLDING, STRUCTURE AND DYNAMICS
    SKOLNICK, J
    KOLINSKI, A
    JOURNAL OF MOLECULAR BIOLOGY, 1991, 221 (02) : 499 - 531
  • [28] Influence of cosolvent systems on the gelation mechanism of globular protein: Thermodynamic, kinetic, and structural aspects of globular protein gelation
    Baier, SK
    McClements, DJ
    COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY, 2005, 4 (03): : 43 - 54
  • [29] Short transmembrane peptide sequences as nucleation sites for globular protein folding
    Rath, Arianna
    Lee, Linda
    Johnson, Rachel M.
    Deber, Charles M.
    UNDERSTANDING BIOLOGY USING PEPTIDES, 2006, : 26 - +
  • [30] Direct conjugation of semiconductor nanocrystals to a globular protein to study protein-folding intermediates
    Sarkar, Rupa
    Narayanan, S. Shankara
    Palsson, Lars-Olof
    Dias, Fernando
    Monkman, Andy
    Pal, Samir Kumar
    JOURNAL OF PHYSICAL CHEMISTRY B, 2007, 111 (42): : 12294 - 12298