Mapping of RNA-protein interactions

被引:15
作者
Gopinath, Subash Chandra Bose [1 ]
机构
[1] Natl Inst Adv Ind Sci & Technol, Ctr Appl Near Field Opt Res, Inst Biol Resources & Funct, Tsukuba, Ibaraki 3058562, Japan
关键词
Ribonucleic acid; Ribonucleic acid-aptamer; Ribonucleic acid-protein; Mapping; HEPATITIS-C-VIRUS; HIGH-AFFINITY BINDING; IN-VITRO SELECTION; HIV-1 NUCLEOCAPSID PROTEIN; PRIMER EXTENSION ANALYSIS; ENDOTHELIAL GROWTH-FACTOR; MESSENGER-RNA; NUCLEIC-ACID; ESCHERICHIA-COLI; IMMUNODEFICIENCY-VIRUS;
D O I
10.1016/j.aca.2009.01.052
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
RNA-protein interactions are important biological events that perform multiple functions in all living organisms. The wide range of RNA interactions demands diverse conformations to provide contacts for the selective recognition of proteins. Various analytical procedures are presently available for quantitative analyses of RNA-protein complexes, but analytical-based mapping of these complexes is essential to probe specific interactions. In this overview, interactions of functional RNAs and RNA-aptamers with target proteins are discussed by means of mapping strategies. (C) 2009 Elsevier B.V. All rights reserved.
引用
收藏
页码:117 / 128
页数:12
相关论文
共 133 条
[1]   Hydroxyl radical footprinting in vivo:: mapping macromolecular structures with synchrotron radiation [J].
Adilakshmi, Tadepalli ;
Lease, Richard A. ;
Woodson, Sarah A. .
NUCLEIC ACIDS RESEARCH, 2006, 34 (08)
[2]   Oxidative deamination by hydrogen peroxide in the presence of metals [J].
Akagawa, M ;
Suyama, K .
FREE RADICAL RESEARCH, 2002, 36 (01) :13-21
[3]   ISOLATION OF HIGH-AFFINITY RNA LIGANDS TO HIV-1 INTEGRASE FROM A RANDOM POOL [J].
ALLEN, P ;
WORLAND, S ;
GOLD, L .
VIROLOGY, 1995, 209 (02) :327-336
[4]   A specific RNA structural motif mediates high affinity binding by the HIV-1 nucleocapsid protein (NCp7) [J].
Allen, P ;
Collins, B ;
Brown, D ;
Hostomsky, Z ;
Gold, L .
VIROLOGY, 1996, 225 (02) :306-315
[5]  
ANTHONY DD, 1992, J BIOL CHEM, V267, P1554
[6]   Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA [J].
Antson, AA ;
Dodson, EJ ;
Dodson, G ;
Greaves, RB ;
Chen, XP ;
Gollnick, P .
NATURE, 1999, 401 (6750) :235-242
[7]   A high affinity binding site for the HIV-1 nucleocapsid protein [J].
Berglund, JA ;
Charpentier, B ;
Rosbash, M .
NUCLEIC ACIDS RESEARCH, 1997, 25 (05) :1042-1049
[8]   Riboswitches as antibacterial drug targets [J].
Blount, Kenneth F. ;
Breaker, Ronald R. .
NATURE BIOTECHNOLOGY, 2006, 24 (12) :1558-1564
[9]  
BOX C, 2002, J MOL BIOL, V315, P551
[10]   Probing the structural dynamics of nucleic acids by quantitative time-resolved and equilibrium hydroxyl radical 'footprinting' [J].
Brenowitz, M ;
Chance, MR ;
Dhavan, G ;
Takamoto, K .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2002, 12 (05) :648-653