Actinocrinis puniceicyclus gen. nov., sp nov., an actinobacterium isolated from an acidic spring

被引:4
作者
Kim, Joong-Jae [1 ]
Marjerrison, Colbran E. [1 ]
Shartau, Sabrina L. Cornish [1 ]
Brady, Allyson L. [1 ]
Sharp, Christine E. [1 ]
Rijpstra, W. Irene C. [2 ,3 ]
Damste, Jaap S. Sinninghe [2 ,3 ,4 ]
Schumann, Peter [5 ]
Grasby, Stephen E. [6 ]
Dunfield, Peter F. [1 ]
机构
[1] Univ Calgary, Dept Biol Sci, Calgary, AB T2N 1N4, Canada
[2] NIOZ Royal Netherlands Inst Sea Res, Dept Marine Microbiol & Biogeochem, POB 59, NL-1790 AB Den Burg, Netherlands
[3] Univ Utrecht, POB 59, NL-1790 AB Den Burg, Netherlands
[4] Univ Utrecht, Fac Geosci, POB 80021, NL-3508 TA Utrecht, Netherlands
[5] Leibniz Inst DSMZ Deutsch Sammlung Mikroorganism, Braunschweig, Germany
[6] Geol Survey Canada, Nat Resources Canada, Calgary, AB T2L 2A7, Canada
基金
加拿大自然科学与工程研究理事会; 欧洲研究理事会;
关键词
Actinocrinis puniceicyclus; acidophile; actinobacteria; 16S RIBOSOMAL-RNA; EMENDED DESCRIPTIONS; PROPOSAL; IDENTIFICATION; ACTINOMYCETE; DIVERSITY; BACTERIA; COMPOST; ABILITY;
D O I
10.1099/ijsem.0.001667
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
An aerobic, mildly acidophilic actinobacterium was isolated from the Ochre Beds bog in Kootenay National Park, Canada. Cells of isolate OB1(T) were Gram-stain-positive, non-motile, pink-to purple-pigmented filaments. The pH range for growth was pH 3.5-6.5 (optimum pH 5.5), and the temperature range was 13-30 degrees C. The major cellular fatty acids were i-C-16 : 0 (28.5 %), i-C-15 : 0 (14.6 %) and ai-C-15 : 0 (14.3 %), and the major polar lipid was phosphohexose. The major quinone was menaquinone-11 (MK-11), and the peptidoglycan type was A1 gamma. The DNA G+C content was 70.2 %. Along with growth on complex media including yeast extract, proteose peptone, casamino acids and tryptic soy broth, growth occured on mono-and disaccharides (glucose, sucrose, galactose and xylose) and polysaccharides (starch, gellan, pectin, xylan and alginate). Anaerobic growth was not observed. The cells did not fix atmospheric nitrogen. On the basis of comparative 16S rRNA gene sequence analysis, this isolate belonged to the family Actinospicaceae, in the suborder Catenulisporineae of the order Actinomycetales. The most closely related species was Actinospica robiniae. However, the 16S rRNA gene sequence identity to this bacterium was low (92.8 %) and there were several chemotaxonomic differences from this species. We therefore propose a novel genus and species, Actinocrinis puniceicyclus gen. nov., sp. nov., with strain OB1(T) (=DSM 45618(T) =ATCC BAA-2771 (T)) as the type strain.
引用
收藏
页码:602 / 609
页数:8
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