Short palindromic repetitive DNA elements in enterobacteria:: a survey

被引：76
作者：
Bachellier, S [1 ]
Clément, JM [1 ]
Hofnung, M [1 ]
机构：
[1] Inst Pasteur, CNRS URA 1444, Dept Biotechnol, Programmat Mol & Toxicol Genet, F-75724 Paris 15, France
来源：
RESEARCH IN MICROBIOLOGY | 1999年 / 150卷 / 9-10期
关键词：
repeat; palindrome; BIME; intergenic region;
D O I：
10.1016/S0923-2508(99)00128-X
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
We present a survey of short palindromic repetitive elements in enterobacteria. Seven families are presented. Five were already known (RSA, IRU, 29-bp repeats, BIMEs and boxC), and their properties are updated; in particular, a new composite element is shown to include the formerly identified boxC repeats. Two repetitions, YPAL1 and YPAL2, found primarily in Yersinia, are described here for the first time. (C) 1999 Editions scientifiques et medicales Elsevier SAS.
引用
收藏
页码：627 / 639
页数：13
相关论文
共 45 条
  • [1] Bachellier S, 1997, GENETICS, V145, P551
  • [2] STRUCTURAL AND FUNCTIONAL DIVERSITY AMONG BACTERIAL INTERSPERSED MOSAIC ELEMENTS (BIMES)
    BACHELLIER, S
    SAURIN, W
    PERRIN, D
    HOFNUNG, M
    GILSON, E
    [J]. MOLECULAR MICROBIOLOGY, 1994, 12 (01) : 61 - 70
  • [3] BACTERIAL INTERSPERSED MOSAIC ELEMENTS (BIMES) ARE PRESENT IN THE GENOME OF KLEBSIELLA
    BACHELLIER, S
    PERRIN, D
    HOFNUNG, M
    GILSON, E
    [J]. MOLECULAR MICROBIOLOGY, 1993, 7 (04) : 537 - 544
  • [4] Bachellier S., 1996, Escherichia coli and Salmonella : cellular and molecular biology, V2nd, P2012
  • [5] IDENTIFICATION OF VCR, A REPEATED SEQUENCE ASSOCIATED WITH A LOCUS ENCODING A HEMAGGLUTININ IN VIBRIO-CHOLERAE O1
    BARKER, A
    CLARK, CA
    MANNING, PA
    [J]. JOURNAL OF BACTERIOLOGY, 1994, 176 (17) : 5450 - 5458
  • [6] SEQUENCES OF THE ENVM GENE AND OF 2 MUTATED ALLELES IN ESCHERICHIA-COLI
    BERGLER, H
    HOGENAUER, G
    TURNOWSKY, F
    [J]. JOURNAL OF GENERAL MICROBIOLOGY, 1992, 138 : 2093 - 2100
  • [7] SPECIFIC INTERACTION OF IHF WITH RIBS, A CLASS OF BACTERIAL REPETITIVE DNA ELEMENTS LOCATED AT THE 3' END OF TRANSCRIPTION UNITS
    BOCCARD, F
    PRENTKI, P
    [J]. EMBO JOURNAL, 1993, 12 (13) : 5019 - 5027
  • [8] The 102-kilobase unstable region of Yersinia pestis comprises a high-pathogenicity island linked to a pigmentation segment which undergoes internal rearrangement
    Buchrieser, C
    Prentice, M
    Carniel, E
    [J]. JOURNAL OF BACTERIOLOGY, 1998, 180 (09) : 2321 - 2329
  • [9] Sequence interruptions in enterobacterial repeated elements retain their ability to encode well-folded RNA secondary structures
    Cromie, G
    Collins, J
    Leach, D
    [J]. MOLECULAR MICROBIOLOGY, 1997, 24 (06) : 1311 - 1314
  • [10] AN 11-BASE-PAIR SEQUENCE DETERMINES THE SPECIFICITY OF DNA UPTAKE IN HEMOPHILUS TRANSFORMATION
    DANNER, DB
    DEICH, RA
    SISCO, KL
    SMITH, HO
    [J]. GENE, 1980, 11 (3-4) : 311 - 318
12345